FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n02_S1_R1_H09_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n02_S1_R1_H09_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGCAATCTGAGGGGGCGTGGTGTCGTGCTCAAGAATGGTTCAATGTAG11.0101010101010102No Hit
CTTATATGAAAAGGTAAGAAGCCAGCTAAAAAACAATGCCAAGGAAATTG11.0101010101010102No Hit
CTTCTTTCTTCTCTTTTGTTATTGCCAGCTGTGACTCTGATGTCAGTATT11.0101010101010102No Hit
CCACAATGTTATACAACAAATTGGAATTTGAACCATTTCAGTCTCTTGTC11.0101010101010102No Hit
TATGGGGAAGATCCGAAAATCGAAACTAACAAGTTTGCTGCAATATGCAC11.0101010101010102No Hit
TAAACACTGCCTGTTCCGCCGGCTACTGGGAGAAACCTTGTTTTACGGCC11.0101010101010102No Hit
ATATGGGGAAGATCCGAAAATCGAAACTAACAAGTTTGCTGAAATATGCA11.0101010101010102No Hit
GGCCAAACCCTCTGGAGCAAAACAAACGATAGGCAACCAAACGACTTACA11.0101010101010102No Hit
TAATCATGTTGTTCTTTATCACTGTTACTCCAATACTCATGTCAGCTGAT11.0101010101010102No Hit
ATTTAGATTGATTCTGTACACAATGCTGTGGTAATGCCAGCCCATGGTCC11.0101010101010102No Hit
CATTTGGAAGTTTGTTTCATACTGGCAAAATCTGTATTCAACAGTCTATA11.0101010101010102No Hit
CATCTGGATCTTCAGTCAATGCACCTGCATCCTTTCCAAGAACTGTAAGT11.0101010101010102No Hit
TTTTCGACTGAATCTAGAAAATTGCTTCTCATTGTTCAGGCACTTAGGGA11.0101010101010102No Hit
TTTCAAGGCTGGGCATGGTGGTTGGGGGGCTTTGGCAGGCAAGCTGGGGA11.0101010101010102No Hit
AGGTAATGGTGAAATTTCTCCAACTAGTGCTCCCTCCTCAGTGAGAGCCC11.0101010101010102No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.0101010101010102No Hit
GTTGGTTCTATTTGAAAATGAAAGAACTTTGGACTACCCCTATTCAAATG11.0101010101010102No Hit
TCTCTTGACATTTGGGAAAGCTTGCCCTCAATGCAGCCGTTCGGCTCGAA11.0101010101010102No Hit
GTACTGAAAGCGAACTTCAGTGTAATCTTTAACCGATTAGAGACCTAGAT11.0101010101010102No Hit
CAAGGTACTTTTTTGGACAGTATGGATAGCAAATAGTAGCATTGCCACAA11.0101010101010102No Hit
GAACTGTACTTGTTGTTGGGCCATTCCTATTCAACCATGTTACGGCCAGA11.0101010101010102No Hit
ATGCGCAAGCTTGCCGACCAAAGTCTCCCACCGAACTTCCCCAGACTTGA11.0101010101010102No Hit
GCGATAGCCCTTCTTTTTAACTTGCCTCTCTCTGCATCTTTGGTCATCGT11.0101010101010102No Hit
CAGCAATTGACTGCTCGTCTCTCCCGCGTACTATCAACTGGATCAATCTC11.0101010101010102No Hit
GTTCACAGCGACAACAAGCAAAGAGGAGAACTTTTATTATTTAGAAATTT11.0101010101010102No Hit
GATCTTGATGATCTCAGAGCACTCTTCTTTCTTGATCCGTCCAGACTCGA11.0101010101010102No Hit
TAACCGTACCATCCATCTACCATCACTCTCCACCCCGCTTCCAAGAAAAC11.0101010101010102No Hit
ATCCAGGAATGTGTAGTTGCACCGGCATCATATTCCATGCGTTTGGCTGG11.0101010101010102No Hit
GGGTGGGATTCTTCAAGGAAAGCCATAGCATCTAGAACACAGTCTGTTTG11.0101010101010102No Hit
ACCGTACTTAGCATGTTGAACATGCCCATCATCATCCCAGGACTCAGTGA11.0101010101010102No Hit
CCTTCAGGGTAGGGGAATGGCCTGTGAGCAGGAAAAGGTAGAGTGGAGAG11.0101010101010102No Hit
GGCATTACCACAGCATTGTTTACAGAATCAATCTCTTTATGACTGACAAA11.0101010101010102No Hit
GAGCAAGGCCGTATTTATGTACACTCCCTTCATTATGTATTCAGTAGCCC11.0101010101010102No Hit
TATCATTGCTGCAAATCACATGTCCTCATTAACACAAATCAGAACACAAC11.0101010101010102No Hit
CACATAAAGTATAACTTATCTAAACCAATTACTTTCTACTATTATATATA11.0101010101010102No Hit
CTACTATGGGCATTCACTGAGGAGGGAGCAATAGTTGGAGAAATTTCACC11.0101010101010102No Hit
GAGCTACAGGACATTGAAAATGAAGAGAAGATCCCAAGGACAAAGAACAT11.0101010101010102No Hit
CCCACATCAATTATGACGAATAAGTTATTGTCAACTTATAAGTTCCTTGC11.0101010101010102No Hit
TCTCCAGACAATGAAAAGATCTCAATGTGACTCTTCTCAGATTTTATTTT11.0101010101010102No Hit
GTGCCGCATTTCTTCAATAAACCACCTTATTTCCTCAAATTTCTGTCCCA11.0101010101010102No Hit
CTCCTATATGAACTGCTAGGGAAAAATTTCTCGAATAGATTGCAGCAGTT11.0101010101010102No Hit
CTCTTCTTTCTTGATCCGTCCAGACTCGAAGTCGCCCCTGGCATCAATCC11.0101010101010102No Hit
ATGCCATAAGCACCACATTCCCTTATACTGGAGATCCTCCATACAGCCAA11.0101010101010102No Hit
ATTACATATATCACAAGAAATCAACCAGAGTGGTTCAGACACATCCTGAG11.0101010101010102No Hit
CACCATGGCCTCCCCCATGCTAGAAATTCCAACCGGTCTCCTATATGAAC11.0101010101010102No Hit
ATGGAAGACTTTGTGCGACACTGCTTCAATCCAATGATCGTGGAGCTTGC11.0101010101010102No Hit
AGAGAATAATGGACATGATTCCAGTGAGGAATGAACAAGGACAAACCCTG11.0101010101010102No Hit
CCCTAATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATACA11.0101010101010102No Hit
GGCATGTGAATTCACTGAATCAAGCTGGATAGCACTTGATGAAATAGGAG11.0101010101010102No Hit
AATATGCACACATTTGGAAGTTTGTTTCATGTATTCGGATTTCCATTTCA11.0101010101010102No Hit
GTTCTTTATCACTGTTACTCCTATACTCATGTCAGCTGATTCATTTACTC11.0101010101010102No Hit
TACCAACACTACGTCCCCTTGCCCAATTAGCACATTCTCTCCTTTTGCAA11.0101010101010102No Hit
GAATTCAAATGTCCCTGTCTTATTTATATAGTACTTCTTTTTGGTCATGT11.0101010101010102No Hit
TTTCATTACCAACACTACGTCCCCTTGCCCAATTAGCACATTAGCCTTCT11.0101010101010102No Hit
CCACTATATGATGCAATCAAATGCATGAAGACATTCATTGGCTGGAAAGA11.0101010101010102No Hit
AAACAAGGCATTTTTTCATGAAGGACAAGTTAAATTCATTATTTTTGCCG11.0101010101010102No Hit
ACAATGACCTTGGACCTGCAACGGCCCAGATGGCTCTTCAATTGTTCATC11.0101010101010102No Hit
GAAGAGAAGATCCCAAGGACAAAGAACATGAAGAGAACAAGCCAATTGAA11.0101010101010102No Hit
GACATGACCAAGGAATTCTTTGAAAACAAATCGGAAACATGGCCAATCGG11.0101010101010102No Hit
GTTGGTAATGAAACGAAAACGGGACTCTAGCATACTTACTGACAGCCAGA11.0101010101010102No Hit
ATTCAAGTCCTCCGATGCGGACCCCAACTGCAGGTTTGACATCCTCCTAA11.0101010101010102No Hit
CTTCGTCAAGGGTGTAGTCCGCTTTGGTGGCCATCTCCTCTCCAGTGAAT11.0101010101010102No Hit
ATCTAATGTCGCAGTCCCGCACTCGCGAGATACTCACTGAGACCACTGTG11.0101010101010102No Hit
CAATTGAATAATTAAAAACAACAAAACAGCTGGAAAAAAACAACCGATAG11.0101010101010102No Hit
TCCTCCTGGAGTGTACATCTGCTCCCAGCACGTCCCTTGGGTTAAGTGCA11.0101010101010102No Hit
CTCATGACAATACAAAGATACCTCATGCAACTCCACGAAGTTATACAAGC11.0101010101010102No Hit
CGAGATACTCACTAAGACCACTGTGGACAATATGGCCATAATCAAAAAGT11.0101010101010102No Hit
GACATATGCAAGGAAGCAATATGGTTCAGCATTAGCACAACTAACACTTT11.0101010101010102No Hit
TTCCAGAACTGGGGAATTGAATCCATCGACATTGTGATGGGATTGATCGG11.0101010101010102No Hit
CGACATATACACAGATAGGTGCCATAGGGGAGACACACAAACTCAGCCGA11.0101010101010102No Hit
CTGTCCTGAGAGGATTTCTAAATTTGGGCAAAGAAGACAAGACATATGGA11.0101010101010102No Hit
TGTTTCCTTTGGCATATCCGCAAGCGATTTGCAGACAATGGATTGGGTGA11.0101010101010102No Hit
TATATTACCTAGAGAAAGCCAACAAAATAAAATCTGAGAAGACACACCTT11.0101010101010102No Hit
ATCCAATGATCGTCGAGCTTGCGGGAAAGAAAGAAGATGGGGAAGATCCG11.0101010101010102No Hit
CTTCTTTCTTGATCCGTCCAGACTCGAAGTCGCCCCTGGCATCAATCCGG11.0101010101010102No Hit
TCCGTACTCCTACAATCTGTGTGCTCTGGCACATTTCCAAGAGAGATTCT11.0101010101010102No Hit
TTGGGGGGGGGGGGTGGGTGCCGTGGGCGGGGGGGGTGGGGGGGGGGGGG11.0101010101010102No Hit
ATGGTGTAAAAGATCTTCATGATATCAGAGAACTCTTCTTTATGGATACG11.0101010101010102No Hit
GTGCCGCATTTCTTCAATTAACCACCTTATTTCCTCAAATTTCTGTCCCA11.0101010101010102No Hit
GGCTAATAGATTTCTTAAAGGATGTAATGGAATCAATGAACAAAGAGGAA11.0101010101010102No Hit
CCAGAGAGGAATGAACAAGGACAAACCCTCTGGAGCAAAACAAACGATAG11.0101010101010102No Hit
TATATCAATACTCCAGCACGGATAGAGTGGTAGTGAGTATTGACCGATTA11.0101010101010102No Hit
CGTCAATGCTTGCTAGCATTTCTCCTTGTAGTTGTGATCGAATCTTAATT11.0101010101010102No Hit
TTTTTGGACAGTATGGATAGCAAATAGTAGCATTGCCACAACTACTTCAG11.0101010101010102No Hit
ACCTATATCACCAGAAATCATGCCGAGTGGGTCAGACACATCCTGAGCAT11.0101010101010102No Hit
GTTTTCATTTGGTCTCATCAGGCTGCCCCCTTGGCTGTTTTGGAGAAATT11.0101010101010102No Hit
CTGTTGCTCTTCTCCCAAACATTGTGAATTCTTCATACCCTTCATGTACT11.0101010101010102No Hit
ATTCGACACTAATTGATGGCCATCCGAATTCTTTTGGTCGCTGTCTGGCT11.0101010101010102No Hit
CACTACGTCCCCTTGCCCAATTAGCACATTAGCCTTCTCTCCTTTTGCAA11.0101010101010102No Hit
GACTCGAAGTCGACCCTGGGATCAATCCGGGCCCTAGACACCATGGCCTC11.0101010101010102No Hit
CAATATACGGAATCTTCACATTCCTGAAGTCTGCTTAAAATGGGAGCTAA11.0101010101010102No Hit
CGTCTGGCCGTAACATGGTGCATAAGGAATGGCCAAAGAACAAGTTCAGT11.0101010101010102No Hit
AACCCTGGCCATGCAGATCTCAGTGCCAAGGAGGCACAGGATGTGATTAT11.0101010101010102No Hit
ATTCGGCCCGGTCTCCTATATGCTCTGCTAGGGAAAAATTTCTCGATTAG11.0101010101010102No Hit
GGCTAAAGACAAGACCACTCTTGTCACCTCTCACTAAGGGAATTTTAGGA11.0101010101010102No Hit
GGCTATGGCTTTCCTTGAAGAATCCCACCCAGGAATATTTGAGAATTCAT11.0101010101010102No Hit
GTCTTCTTTGCCCAAAATGAGAAATCCTCTCAGGACATAATACTCACCAA11.0101010101010102No Hit
CACAAGACCTTCAGGGAAGTCTTGAACCTTCCATTAGAGAGCACATTCTG11.0101010101010102No Hit
AACTCAAACTCAGTGATTTTCATGGACGACTTATACAGAATAGCATAACA11.0101010101010102No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTTGCT50.0145.02
CTCTTCT50.0145.07
TGCTCTT50.0145.05
GCTCTTC50.0145.06
TCTTCTC50.0145.08
CTGTTGC50.0145.01
TGAAAGA50.0145.0145
GTTGCTC50.0145.03
CTTCTCC50.0145.09
TTGCTCT50.0145.04