FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n02_S1_R1_H01_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n02_S1_R1_H01_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAAAAGAACTAACAAATATAATGTCGCAGTCTCGCACCCGCGAGATA12.631578947368421No Hit
CGGTGAATCAATAATTGTAGAATCTGGTGACCCGAATGCACTATTGAAGC12.631578947368421No Hit
ATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTAC12.631578947368421No Hit
GCACTGTATTTGTTATTGGTCCATTCCTATTCCACCATGTCACAGCCAGA12.631578947368421No Hit
TCCCAGGACTCAGTGATGCTGTGCCATCTATTAGAAGAGGCCTTATTTTC12.631578947368421No Hit
ATGTCCTTCCGAGTGAGAGACACAAAAAATTCCAACACACTATTGCAATG12.631578947368421No Hit
GCGCTGCTACCGCGTGTGTCCTGGGTTTGCCAATAGGGAACAGCGAGCTA12.631578947368421No Hit
GCCATATTATACAAAAATACACGACAATAGAATCAAACAACAATTATAAT12.631578947368421No Hit
CCTATCAATGGATCATCAGAAACTGGGAAACTGTTAAAATTCAGTGGTCC12.631578947368421No Hit
TGGAATTGCATCCTGGCAGCAAGCCCCGGCGGGCGCGTCTGTGGCGCTAG12.631578947368421No Hit
GAAAACGTTCTTCGGGGCGAAAACTCTCAAGGATATTACCGCTGTTGACA12.631578947368421No Hit
TGCGCCGACCGAGTTGCTCTTTCCACGCGTCAATACGGGATAATAACGCG12.631578947368421No Hit
GTAAATGATGAGAAATGCATTCTAGGGTGCTTTGGTGGAGAGGCTGCGAA12.631578947368421No Hit
TCAATGTACACACTGCTTGTTCCACCAGCCACTGGGAGGAATCTCGTTTT12.631578947368421No Hit
CATTGATAGCTCAAGCGCCAAGGTGATTCAGGGCACGGACGGGGCCAGAT12.631578947368421No Hit
GTTGAGACCAACCGACTCTATAAACCCAATGACGTTACAGAGACAATGAC12.631578947368421No Hit
CTATATATCCAATGCAGAAAATGAAATCAGAATAATCTAATCAAAAAGTT12.631578947368421No Hit
GTTACAAATAAAGCAATAGCATCACAAATTTAACAAATAAAGCATTTTTT12.631578947368421No Hit
CTAATGTCGCAGTCCCGCACTCGCGAGATACTCACTAAGACCACTGTGGA12.631578947368421No Hit
GTATCCTGGCTCCCACTTCGTTAGGGAAAACCACTTCCATGATTACATCC12.631578947368421No Hit
GATAGAGATAGATAAATTTCGTTGATCTGGCGAGCACCTCTCGCTTTGTT12.631578947368421No Hit
AGCAGAACTTTTTCCAACTGCCAAAAATTATGGGCACCTCATGAAGCCCC12.631578947368421No Hit
GACCAATCTACAAGGACAATGCCTCAGTATAAAAACTTTTGATAGCCAAG12.631578947368421No Hit
CATTCACTCTAATCTTAAATTTTTGCACATTGCCCGTAAGCACCTCTTCC12.631578947368421No Hit
CACCAATACTCAGAAAANNGANNNNNGNCNANNNNNNNANNNNNNNNNNN12.631578947368421No Hit
GGAGAGACGAACAGTCGATTGCCGAAGCAATAATTGTGGCCATGGTATAT12.631578947368421No Hit
TCTCATTCCCATTGCAGCCTTGAATATCTCCACGGCTTTCTCTTCTGTTG12.631578947368421No Hit
GAATTATTCACTGCTGCAATAACCTTTCGTTGAAACAATACGCGGAAGGT12.631578947368421No Hit
CCCCAGCTCAACCCGATTGATGGACCACTACCTGAGGATAATGAACCAAG12.631578947368421No Hit
CCATTGCAGCCTTGCATATCTCCACGGCGTGCTCTTCTGTTGGGTTCTTC12.631578947368421No Hit
TGGTTGGACGGGTCATCCGCGAAAGTGGGCTGGCCGGGGGTGCGGCTTGC12.631578947368421No Hit
GTTATGGAAGCACTGCATAATTATCTTACTGTCATTACATCCGTAAGATG12.631578947368421No Hit
CATTAGCCTTCGATCCTTTCGCACGGTGGATCAGTTCATTGATGCTGCGT12.631578947368421No Hit
TTTGAATACAGGAGAATTGCCCCTTACAAGTATTCGCATTCCTGATAACA12.631578947368421No Hit
GCATAATTCTCTAACTGTCATGCCATCCGTAAGATCCTTTTCTGTGACTG12.631578947368421No Hit
AATCTCTTACTGTCATGCGATCCGTAATATCCATATCTCTCACTGGTAAG12.631578947368421No Hit
ACGTCGGAGAGTTGACATAAATCCTGGTCATGCAGATCTCAGTGCCAAGG12.631578947368421No Hit
GGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTT12.631578947368421No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)