FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n02_S1_R1_A01_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n02_S1_R1_A01_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTATTTTCTAAATTTTCTGCTTTGTTGATGAATTGAAGTACTTCATT12.631578947368421No Hit
GGAGTAAATGAATCAGCTGACATGAGTATTGGAGTAACAGTGATAAAGAA12.631578947368421No Hit
GTTCTAAGCATAGCATAAATGTTAATTGTTCGAAACTATTCTATGTATCT12.631578947368421No Hit
CTGTTAATCCTCAAAACATCACAATTGCCATGAGTACAGAAAAGAACGAT12.631578947368421No Hit
CTCAACAATGGTTCAAATATTGCGGTGACTTCTTTTGAAATTTTTCAAAG12.631578947368421No Hit
CTAAAACCTGGAGCAAACGGGTGTCTGAATTACTGCGTGAAGCGTTGTCT12.631578947368421No Hit
CTCTTATTCTAACGTGAAGTCCGATTTCGTGGCCATCACCTCTCAAGTGA12.631578947368421No Hit
CAACTGTGTAATTAGGTATAAATTTTCAAGGCACAAATTAATTCTCAGTG12.631578947368421No Hit
ACAAATAGCTTAAGCACAAAAATCATTTAAACTAGATTCTAATCAATAAA12.631578947368421No Hit
GTGCAAGATCGCATTGCTGTTTGGTGCTAGGCCGAGAGTCTCACTTGAGT12.631578947368421No Hit
CCCAAGACCTTACTTAGCATGTTGAACATGACCATCATAATCCCAGGACA12.631578947368421No Hit
ATCCAAACACTGAAAATAAGAGTACAGGATGGGTATGAAGAATTCACAAT12.631578947368421No Hit
CCTTTTGCAAGATTGCTCAGTTCATTGATGCTTAATGCTGGGCCATATCT12.631578947368421No Hit
CAATAGAGCACATCAACAAACAGAATGCACACAGTTATAATACAACAACC12.631578947368421No Hit
CAATCCGACTCTACTTTTCCTAAAAATTCCAGCGCAAAATGCCATAAGCA12.631578947368421No Hit
AATATATTCAATATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCA12.631578947368421No Hit
GACTTAAGGCATGTGATGCATCCCTAACTTGTATGAGTTTGTTCATGGTG12.631578947368421No Hit
GGGTTATGTCGTGTTGATGTTTTGGTTGATGAATTTTCAATGGTTGGGGG12.631578947368421No Hit
CTCACAAGATTTGCCAGTTGGGGCTTATTTTCATTGCCCCCTACTGGGAG12.631578947368421No Hit
ATCCATAGCGATAAAAAAAGCTTGTGAATTCAAATGTACCTGTATTATTT12.631578947368421No Hit
ATATAGTAATTATTTTTTCTCATTTTTATTCCCAATAACTTGAAGGTACA12.631578947368421No Hit
GAGTAACCATCCTTGACATACTAAGACAGAATCAAACTGAGGAAAAAGCC12.631578947368421No Hit
GGACAACACTAAGTGGAATGAAAATCAAAATCCTCGAATGTTCCTGGCGA12.631578947368421No Hit
TGTGAATTGACTGATTCAAGCTGGATATAACTTCATGAAATAGTAGAAGA12.631578947368421No Hit
CTCACATTCACAGTCAATGCTGAAAATTGCATACTAATCTGTTATGTTGG12.631578947368421No Hit
ATCTACTCCCATTTTGCTGACTCTTATCACTCTCAGCGACATCTCCCTGC12.631578947368421No Hit
AATATGGAAAGGGTACATGTTCGAGAGTAAAAGAATGCAGATTCTAACAC12.631578947368421No Hit
AGCAAAAAGAAGTCATATATTAATAAGACAGGGACATTTGAAATCAAAAG12.631578947368421No Hit
GAGCTGTAGTATTACTCTACTCACATTTTGATGCCTCTTATCAATCTCAG12.631578947368421No Hit
AAGTAGCACATTAGCCGGCGCTCCTTGTGCAATCTTGCGCCGGGCAGTGC12.631578947368421No Hit
GGTTCAGAAACATCCTGAGCATGGCACCAATAATGTTCTCAAACAAAATG12.631578947368421No Hit
ATCTAAAGACTTCTATTGTGTTGGCCAATGCAGTTGCTGCCGGTTGATTT12.631578947368421No Hit
GCCCAATCTAAGGTAGGGCTATTAGTGTCAGATGGAGGACCCACCTTATA12.631578947368421No Hit
GTTAGAGTATGGGCTAATTAAAGTAAAGACAGCACTGTTAGAATCGTTTA12.631578947368421No Hit
GAAAGCAGAGCTCCAGGATTGTAAAATGGATCCCTTGATGGTGGCGTACA12.631578947368421No Hit
CCATAAAAGTAAGTACATCTTTTCGCAAATCAACTTATGAGTTTGCAAGT12.631578947368421No Hit
GATCTTCATGATCTCAGAGAACTCTTCTTTCTTGATCCGTCCAGACTCGA12.631578947368421No Hit
CTCCCATTCTCATCACAGTTTCTCCAAGCGAATCTCTGTATATTTTCAGA12.631578947368421No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)