FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S2_R2_D04_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S2_R2_D04_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGAGAGGTACAAACCAGCCCCCCAGAGACTCCGTCTAAGAGAGAATA10.9615384615384616No Hit
GTCCTGCAAGGAGGAATATTGTCCCCATTTCACAGGGGAGAAAACAGGCT10.9615384615384616No Hit
ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGC10.9615384615384616No Hit
CCTTCTGGGTGGCACGCTGACATCTCGGGGATTTCTCAGGTCTTGGCCCT10.9615384615384616No Hit
TCACAAGTGTTTGCTCCCACCCAGCGTGAGTGGGGCTACAGGACGGTCTG10.9615384615384616No Hit
GATAACAACCCACTTTCAAAGAAAAAGGAGAGTAAGAGACAACATGACCA10.9615384615384616No Hit
ACATGGGCCTCGACACTTGGCCTATCGCAGTCCTCAAGAGCATGTCTCCT10.9615384615384616No Hit
GAGTTGGTGCATGGGGTTCAGTCGCTGGTTTGCCCTATTGACAAAGTTCA10.9615384615384616No Hit
GGCATTGTCCCACAAGATGGTGGCTTTGGCATTGTTGTCCTGGTTGCCGT10.9615384615384616No Hit
CCCCATCTCACCAATATGCCCCTCCCTGGGAGGGTGCAGGATACTTGTGA10.9615384615384616No Hit
GATGTGAACGATGTACGGTGCTTACTGCAGCAGAAATGCTGGTGGGGCTT10.9615384615384616No Hit
TAATAGCTTAGTGACACCTAATTTTCCACATGGAAAGTTATTTATATTTT10.9615384615384616No Hit
CCTGCACCGGCGCCGGTGCCTGCGCTTGCACCTGTTCCCGCCCCAGCCAC10.9615384615384616No Hit
CTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAGTCCT10.9615384615384616No Hit
CCTGGCTTGGGGATGGGGAAGTCCCCGAGGTCTTCATCCTCGGAAAACGT10.9615384615384616No Hit
ATTGATGGCCATACGAATTCTTTTGGTCGCTGTCTGGCTGTCAGTAAGTA10.9615384615384616No Hit
CTCTGGGAGGCCCACAAAGGGGAGGGAGAGTGGCCATAGAATCAGCCTGG10.9615384615384616No Hit
GTTCTTATCTTTTCCACGAATAGGTGTTTGCTATAATTTACTAATATGTG10.9615384615384616No Hit
CGCCCGCGACGGCCAGAGAACCCGCTGCCAAGCCAGGTTGGTTAATGAAG10.9615384615384616No Hit
TCTTTGCAGTCATCAAAGTCTACTTTTTCTGGTGCCATATTTTCACCGAG10.9615384615384616No Hit
TGTCCAAGGAAGGAACGATCGGGTTCGTTGCCGTTTCGTCCGAGAGCTAG10.9615384615384616No Hit
TGGAGATGTCTACGGCTTGTTCCTCAGTTGGATTCTGTCTAAGGATGTGA10.9615384615384616No Hit
GCATTAGAGAGCACATTCTGGGATCCATTCCGGTGCGAACAAGCGCTCTT10.9615384615384616No Hit
GAGTTGATACAAACCCTGGCCATGCAGATCTCAGTGCCAAGGAGGCACAG10.9615384615384616No Hit
CTCTAGAACACAGTCTGTTTGTGCATACCCACTTGGTTCATTATCCTCAG10.9615384615384616No Hit
CAGTCATTATTTGCTGTTGAAATTCAGTTTTTATTTAAATAATACCACAG10.9615384615384616No Hit
ACTGAACCCCATGCACCAACTCTTGAGGCATTTCCAAAAAGATGCAAAAG10.9615384615384616No Hit
GAGTAGCCGGAAAGTGGATGAGAGCACTCATCCTGTATGACACAGAAGAA10.9615384615384616No Hit
GCATCATACCTGAGCTGAAGGCAGACACTTAACCACTGAGCCACCCAGGC10.9615384615384616No Hit
GTTCCATTGGTTCTCACATATAGGAACATGGGCCTCGACACTTGGCCTAT10.9615384615384616No Hit
CATCTCGGATCGTGATTCCTCATTTAGAAGGAAGAACCAAATCTTGTCCA10.9615384615384616No Hit
CAATTCATCCATTATGCACGAATTTATCTAAAAATGCTGTAAACATTTCA10.9615384615384616No Hit
GTCATACTCCTCTGCATTGTCTCCGAAGAAATAAGACCCTTCATTACTCA10.9615384615384616No Hit
GTCCCCTTTGTGGTGGCTGAGCGCGTGCCCTGGGAGAAGATGTGTGAAAC10.9615384615384616No Hit
GGTATTCTCACAGGAGGATTGCATGATCAAGGCAGTTAGGGGCGATCTGA10.9615384615384616No Hit
AGTGTGTGCCACTTGTGAACAGATTGCTGATTCACAGCATCGGTCTCACA10.9615384615384616No Hit
CCATTATAGAAATACCCACGTATTTGATGACAGGTTGCATCAAACTCCAC10.9615384615384616No Hit
GCATTAAGCAAAACCCAGGGATCATTAATCAGGCACTCCTCGATTGCTTC10.9615384615384616No Hit
GAGTTAATTTGGTGTAGTGATTTAGATGCCTTTGCCTTCTGCCCTATGTA10.9615384615384616No Hit
CAATGTTATACAACAAAATGGAATTTGAACCATTTCAGTCTCTTGTCCCT10.9615384615384616No Hit
GAGGACCAAACTTATACAATATACGGAATCTTCACATTCCTGAAGTCTGC10.9615384615384616No Hit
CCCGGGCCGGTGGGGAGGTTGGAGAAGGAAGGACCAGGAGGACCAGACCG10.9615384615384616No Hit
TTACTCATGTCAAAGGAAGGCACGATCGGGTTCGTTGCCTTTTCGTCCGA10.9615384615384616No Hit
CCCTGTTCCCCCGGTGCACTTCTCACTTCTTATTCTGGACCTTGTTCTGC10.9615384615384616No Hit
GTCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTGGAAAGTGTCTTTG10.9615384615384616No Hit
TGACCAAGGAATTCTTTGAAAACAAATCGGAAACATGGCCAATCGGAGAG10.9615384615384616No Hit
GAAATAAGACCCTTCATTACTCATGTCAAAGGAAGGCACGATCGGGTTCG10.9615384615384616No Hit
GCACCTGCACCTGCTCCAGCACCTGTCCCTGCTCCTGCACCTGCTCCTGC10.9615384615384616No Hit
CTTAATTTCAGAGCATCCATCAGCAGGAACTTTGACCGCTGATGGCAAAG10.9615384615384616No Hit
TCACTCCTGACACCTAGTTACCAAACTGGCTCTTTCCACCACGTGGTCAG10.9615384615384616No Hit
CTAACAAGTTTGCTGCAATATGCCCACATTTGGTAGTTTGTTTCATGTAT10.9615384615384616No Hit
CGGCATTCTGAACCTACTTCAGCTTCCGCGCACAGGGTGCAATTTGCCGT10.9615384615384616No Hit
TTTTGACATTTGGGAAAGCTTGCCATCAATGCAGCCGTTAGGCTCGAATC10.9615384615384616No Hit
GAACAATGAGAAGCAATTTACTAGATTCAGACCAAAACCCCTCAAGTTGT10.9615384615384616No Hit
GTTCAAAAACAGGAATTAAGAATACCGACATACTTCTCAAAGTAGCAGTA10.9615384615384616No Hit
AGTAGAAACAAGGCATTTTTTCATGAAGGACAAGTTAAATTCATTATTTT10.9615384615384616No Hit
ATATGACGTTGGTCTCAATTTAAAAAGTATTCAATGAAAACAGTAGAAGA10.9615384615384616No Hit
GTCCTGGCGCGAATATGCAATGCGCACGCCTTACAGTGCCCTTAACCGTG10.9615384615384616No Hit
GGCCTGAAGAGACGGGGGGACCCCGTGGTGCAGGCTTGAGCCAAGTTCTT10.9615384615384616No Hit
GTAGTTGTAAGGCTTGCATAAATGTTATTTGTTCGAAACTATTCTCTGTC10.9615384615384616No Hit
ATTACATATATCACCAGAAATCAACCCGAGTGGTTCAGAAACATCCTGAG10.9615384615384616No Hit
ACCCGCATCCAGCACTGTTCTGATGCCAGGAAGGGGTGTGGATTGAAGGG10.9615384615384616No Hit
GTTTTCTGAAGATGATGTTCCAAGTAGAAATTTATCACTATTCTTTTCTA10.9615384615384616No Hit
GTAATGGAATCAATGAACAAAGAGGAAATAGAGATAACAACCCACTTTCA10.9615384615384616No Hit
CATCAGGAAGGCAAGAGAAGAACCCCGCACTCAGAATGAAGTGGATATTG10.9615384615384616No Hit
CTGCTGTTCCTGTTGATATTCTTCCCTCATGGACTCAGGCACTCCTTCCG10.9615384615384616No Hit
GGAGAAGAGCAACAGCTATTCTCAGAAAGGCAACCACGAGATTGATCCAG10.9615384615384616No Hit
ATCCCAATGATATTTGCTGCAATGACGAGAGGATCACTTGAATCGCTGCA10.9615384615384616No Hit
TTACTTGTCAATGGTAAATGGCAACTCAGCACCGTCTGGCCAAGACCAAC10.9615384615384616No Hit
GTAGAAAGAATAGTGATGATGCCATGCATTACATTAATAGGAGTGAAGTG10.9615384615384616No Hit
TGGATTGTCTTCCCGTTTGTTTGTGCCATCTTCAATTTATTTCATCAGTG10.9615384615384616No Hit
ATATGAACAATTGGAGACTCCAGCCGACCGCAACGATGCCACAGAAAGCA10.9615384615384616No Hit
AATATAAGCAGTGTGACAGCACTAATGAACCTAGCAGCCGGAACTTCCCC10.9615384615384616No Hit
CTGCGTGAAGAGAAATTGTAGGGGATGTAAGCATGAGAGCTTTTCCTTAA10.9615384615384616No Hit
GAATTGAATCCATCGACAATGTGATGGGAATGATCGGAATACTGCCCGAC10.9615384615384616No Hit
GACTTCAGGAATGTGAAGATTCCGTATATTGTATAAGTTTGGTCCTCCAT10.9615384615384616No Hit
ACAATATACTGGTGGGATGGGCTCCAATCATCCGACGATTTTGCTCTCAT10.9615384615384616No Hit
GTATTCCGCCAAGTAAGATATGCCAGTTGCGAAAAGAAATACTTTGTGAT10.9615384615384616No Hit
CCTCTTACTTGTGTGCTCACAATCCCTCCGGCTCAGGGCAGCCGGGCTCC10.9615384615384616No Hit
CACAGAGACTGGTGCACCCCAGCTCAACCCGATTGATGGACCACTACCTG10.9615384615384616No Hit
GTTGAGGATACTGGTAAGAGGCAATTCTCCAGTATTCAATTACAACAAGG10.9615384615384616No Hit
CTTTCAGAGGACGGTGCACTTGGGAATGCAGGTACTGATGCTGAACTGTG10.9615384615384616No Hit
GGTTCATTATAAAAGGAAGGTCTCATTTGAGAAATGATACTGATGTGGTG10.9615384615384616No Hit
GCCATATTTTCACCGAGTGCCCACTTCAATTGGCTTGTTCTCTTCATGTT10.9615384615384616No Hit
CTCCGAGGACACTGGCCGAGGCCATCAGCCACTCCAGACCTGGCCTCAGG10.9615384615384616No Hit
TCTCATAACAGTTTCTCCAATCGAATCTCTGTATATTTTCAGCGACTCGA10.9615384615384616No Hit
GAGCAAGGACAACCCCTCTGGAGCAAAACAATCGATGCTGGATCAGACCG10.9615384615384616No Hit
GTGTTGACTAGCACTGACTCAGGGCCATTGATCTCCCACATCATTGATGA10.9615384615384616No Hit
CAGGAGGATTGCATGATCAAGGCAGTTAGGGGCGATCTGAACTTTGTCAA10.9615384615384616No Hit
TTCCCAGGGTTCCAGTCCTCTAGGGACGTGTGCAAGCTTTGGCCAGTCAT10.9615384615384616No Hit
TCTGTATTGTCTCCGAAGAAATAAGACCCTTCATTACTCATGTCAAAGGA10.9615384615384616No Hit
GCGGGAGCGAATAAAAGCACTTAGAGATCTCCTGGCGCCGTACAGCCCTC10.9615384615384616No Hit
CTATATGATGCAATCAAATGCATGAAGACATTCTTTGGCTGGAAAGAGCC10.9615384615384616No Hit
GTATGAAGATACATGCACAGAGGTCAGCATTTTAAAATTGCAAAAGGATT10.9615384615384616No Hit
CTTGTTGGGAAACAAATCGTGGAATGGATCTTGAAAGAGGAATCCAGCGA10.9615384615384616No Hit
AGACCGTACTTAGCATGTTGAACATGCCCATCATCATCCCAGGACTCAGT10.9615384615384616No Hit
GTAGGAGACAGAGTGGCATTTTGTACAATATTAAATTCAGGTTCTCAATA10.9615384615384616No Hit
GGAATAAACATAACCAAAGAATTAAAAAATCTATACACTGAAAACTAGAA10.9615384615384616No Hit
GGCCGCAGGTCAAAGAAGTTGTCCGGTCCAGCTGCCGTGGGTTACAGGAT10.9615384615384616No Hit
CACCATTGCCTCCACAATGCGAGAAAGTAACAAAGGTCTCCGATCTGCAC10.9615384615384616No Hit
GAGCCGGGAGGCCAATGGGGGACCTCAGCCCGGGACCCTGTGATCATGAC10.9615384615384616No Hit
TCCCCGGGCTATTTTTTTTGTTGTTTAGATCCTTACATACGGGGCGCGCC10.9615384615384616No Hit
GACACATTATGTATAGGTTATCATGCGAACAATTCAACAGACACTGTAGC10.9615384615384616No Hit
GGGACTGGGGACCCGAACAACATGGATAGAGCAGTTAAACTATACAAGAA10.9615384615384616No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers