FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S2_R2_C01_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S2_R2_C01_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATTACATCAAAGATGTAGATGTTGGGTAGTTTAGACATCTTAACATTA16.25No Hit
AAACAAGGTCGTTTTTAAACAATTCGACACTAATTGATGGCCATCCGAAT16.25No Hit
GGAGTAAATGAATCAGCTGACATGAGTATTGGAGTAACAGTGATAAAGAA16.25No Hit
GAATATGATTCAGTTGCAACTACACATTACTGGATTCCAAAGATGAATAT16.25No Hit
GGTTAAAACACCTTTTAAAAGATCACTGCATCTCGTAAACAATACTGCCT16.25No Hit
GCAGGAATTGGATCAGGTGCAGGAGCAGGTGCAGGAATAGGAGCAGGAGC16.25No Hit
AGACAAGAGAATAATGGACATGATTCCATATATGAATGAACAAGGCCAAA16.25No Hit
GTGACATCGTACGTGGAAGAGTAAGGTAGAAACAGGTTAGGGGGAAAGAG16.25No Hit
AGCAGGTACTGATCCAAAATGGAAGACTTACTGCGACAGTGCTTCAATCC16.25No Hit
ATCCACCCTCAAGTGTGGCACAGGGGCAAAGCCAGGGTCAACCATCCTCA16.25No Hit
ACTCTCACTTTTCCACTTACCTCATGGGAGTGGAATCAGACAGCACTCTT16.25No Hit
TATTAGAAGAGGCCTTATTTTCTCAATTTTCTTCTTTGTTGATTCATTGA16.25No Hit
GGTACAGAAAATCAGTATATTGCTGTGGCTGGGGAATTTTTATTTCCTGA16.25No Hit
GCTTTGCAATATGCCAAGTCTTCTTTTAGTAGAGTCAGATTTACACCAAG16.25No Hit
CTCATTCTGAGGGGATCAGTTGCACATAAATCCAGCCTGCCAGCATCTGA16.25No Hit
ACACAGTCACTTCTCATTTAGAGAAGAACTAACTCACTTGAAAAGGCACA16.25No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)