FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S2_R1_H05_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S2_R1_H05_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTAAGGCTTGCATAAATGTTATTTGTTCGAAACTATTCTCTGTAGCT15.0No Hit
GGAATGATCGGAATACTGCCCGACATGACCCCAAGCACGGAGATGTCGCT15.0No Hit
CATCAGTATCATTTCTCAAATGAGACCTTCCTTTTATAATGAACCCATAC15.0No Hit
GTACATAAATACGGCCTTGCTCAATGCATCCTGTGCAGCCATGGATGACT15.0No Hit
GCTTTGGAGTGGCTGGAGTAAATGAATCAGCTGCCATGAGTATTGGAGTA15.0No Hit
CATTCGAGGATTTTGATTTTCATTCCACTTAGTGTTGTCCCCAGTGATTG15.0No Hit
GGTCAATACTCACTACCACTCTCTCCGTGCTGGAGTATTCATCTACTCCC15.0No Hit
CGTCCTGATATCAGAGCACTATTATTTATTTATACTTCAAGAAGCGAAGG15.0No Hit
CGCAAGCACATCCCCCATTTGCTGGTCCAGAGTCCTTACGAAGACAGACT15.0No Hit
GAGTCAGGAAGGCTAATAGATTTCTTAAAGGATGTAATGGAATCAATGAA15.0No Hit
GAGAATGGGAGACCTTCACTACCTCCAGAGCAGAAATGAAAAGTGGCGAG15.0No Hit
GAAGAAACAAGGTACTTTTTTGGACAGTATGGATAGCAAATAGTAGCATT15.0No Hit
GAATCAGTCAATTCACATGCCTTATGGAATTCATTTAGGACGCCGCTTGC15.0No Hit
CTTGTGAATTAGTCATCATCTTTCTCACAACATTTGCCAGTTTGGCCTTC15.0No Hit
GAGATCAAAAGTCCTTAAAAGGAAGAGGCAACACCCTTGGCCTCGATATC15.0No Hit
GAAAGAATATGGGGAAGATCCGAAAATCGAAACTAACAAGTTTGCTGCAA15.0No Hit
ATACTCACTACCACTCTCTCCGTGCTGGAGTATTCATCTACTCCCATTTT15.0No Hit
ATTGTTTACAGAATCAATCTCTTTATGACTGACAAAGGGATTCAGGGGAT15.0No Hit
CACCATGGACACAGTAAACAGAACACACCAATACTCAGAAAAGGGAAAGT15.0No Hit
GTATTGACCGATTTTTAAGGGTTAGAGATCAAAGAGGGAACGTACTATTG15.0No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)