HTGTLBGXG_n01_S2_R1_F01-FD.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HTGTLBGXG_n01_S2_R1_F01-FD.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1353159
Sequences flagged as poor quality	0
Sequence length	151
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATACA	3251	0.24025262367541436	No Hit
TTTTTAAACAATTCGACACTAATTGATGGCCATCCGAATTCTTTTGGTCG	2802	0.2070710093935746	No Hit
AATATATTCAATATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCA	2656	0.19628144216607213	No Hit
GAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATA	2486	0.18371824744911722	No Hit
CCTATATGAACTGCTAGGGAAAAATTTCTCGAATAGATTGCAGCACTTCT	2110	0.1559314167810287	No Hit
AGTAGAAACAAGGCATTTTTTCATGAAGGACAAGTTAAATTCATTATTTT	1811	0.1338349743082668	No Hit
CACTAAGACCACTGTGGACCATATGGCCATAATCAAAAAGTACACATCAG	1752	0.1294748067300295	No Hit
GGTCAAATATATTCAATATGGAGAGAATAAAAGAACTGAGAGATCTAATG	1609	0.11890694293870861	No Hit
GTAGAAACAAGGTCGTTTTTAAACAATTCGACACTAATTGATGGCCATCC	1435	0.10604814364017828	No Hit
ATTCAATATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCC	1367	0.10102286575339632	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAATTCG	720	0.0	46.318077	9
AGCGAAA	245	0.0	41.44419	1
CCTTATA	1220	0.0	40.425076	2
AGTAGAA	1330	0.0	40.353558	1
TTATACT	1475	0.0	36.878307	4
TATATTC	1145	0.0	36.73874	3
TAGAAAC	1560	0.0	35.798748	3
AGGTCGT	530	0.0	35.57945	6
ATATTCA	1150	0.0	35.31766	4
GACAGTA	450	0.0	33.829834	7
GGTCGTT	605	0.0	31.153801	7
CCGCACG	140	2.7444745E-5	31.076252	145
GTAGAAA	1755	0.0	30.58133	2
CGAAAGC	405	0.0	30.443575	2
ACAATTC	1145	0.0	29.757845	8
TATACGT	175	3.7648424E-6	29.010937	4
CGACGGT	20	0.006079753	28.997215	125-129
GTCTAAG	655	0.0	28.789476	1
AATATAT	1495	0.0	27.652563	1
TCGTTTT	685	0.0	27.517437	9