FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S2_R1_C05_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S2_R1_C05_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTACAACGGAATGAAATAACCTGCTTTGACGAGAGCATCACATGAAT18.333333333333332No Hit
GGCTTTTTGACGTCTGCGTCCTTACAGCGTTGCAACTCGATCACGAATCT18.333333333333332No Hit
CTCTGATCCCTCTCAGCGACATCTCCGTGCTTGGGGTCATGTCGGGCAGT18.333333333333332No Hit
GGCTTGGCTCGATTCGACCGTGGGTGTCTTTGACCCAGAATCTGGAAGAT18.333333333333332No Hit
CTCTTGAGGAATTTCCAAAAAGATGCAAAAGTGCTGTTCCAGAACTGGGG18.333333333333332No Hit
ACTTAATTTCAGAGCATCCATCAGCAGGAACTTTGACCGCTGATGGCAAA18.333333333333332No Hit
CTGTTAACCTTCTAGAAGACAAGCATAACGGGAAACTATGGAAACTAAGA18.333333333333332No Hit
GATGTCAATCCGACTCTACTTTTCCTAAAAATTCCAGCGCAAAATGCCAT18.333333333333332No Hit
TGATATATGTAATCAACGCCAGGAACATTCGAGGATTTTGATTTTCATTC18.333333333333332No Hit
GTTCGTTGCCCAAAATGAGAAATCCTCTCAGGCCAGCAGCCTCCACCCCA18.333333333333332No Hit
GTCCAGACTCGAAGTCGACCCTGGCATCCATCCGGGCCCTAGACACCATG18.333333333333332No Hit
GACTACACCCTTGACGAAGAGAGCAGGGCAAGAATCAAAACTAGGCTTTT18.333333333333332No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)