FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S2_R1_A09_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S2_R1_A09_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATTGCTCGATAAAACTCTTGTCATCTTATCACAAAATGAGATATCC10.9090909090909091No Hit
GGACATTTGAATTCACAAGCTTTTTTTATCGATATGGATTTGTGGCTAAT10.9090909090909091No Hit
CCTCATGCTTGCGATATGTTCAATCGGGGCAACATCTGCTCCTATTTCAT10.9090909090909091No Hit
GATTGGAGGAGTAAGGATGGTGGACATCCTTAGACAGAATCCAACTGAGG10.9090909090909091No Hit
AAATAAGACAGGGACATTTGAATTCACAAGCTTTTTTTATCGCTATGGAT10.9090909090909091No Hit
GAAGGGTGCTGGCTAGCACTACGGCAAAGGCTATGGACCAGAGGGCTGGA10.9090909090909091No Hit
CATAGTAAGAAGCGCAGCAGTGTCAGCAGACCCATTAGCATCTCTCTTGG10.9090909090909091No Hit
GGAATACCACTATATGATGCAATCAAATGCATGAAGACATTCTTTGGCTG10.9090909090909091No Hit
CCCCTGATCCTATCACATTCACAGTCAATGAGCAAAAAACCATCCTACTT10.9090909090909091No Hit
GAATAAGAGAGGCTATCTAATAAGAGCACTGACATTAAATACGATGACCA10.9090909090909091No Hit
CTTATTAGATAGCCTCTCTTATTCAGTCTTTGGTTTTTCTTCCCTATTGT10.9090909090909091No Hit
AAAATATTCAATATGGAAAGAAAAAAACAACACAGACATCAAATCTCGCA10.9090909090909091No Hit
AATGTGAAGAACTTATATGAAAAGGTAAGAAGCCAGCTAAAAAACAATGC10.9090909090909091No Hit
CCAGCAGCCGGTACAGTGGATTCGTAAGGACACTGTTCCAGCAAATGCGG10.9090909090909091No Hit
TAGGTCCTCCTCATGCTTGCGATATGTTCAATCGGGGCAACATCTTCTCC10.9090909090909091No Hit
GGCAATGAGATACCCAATTACAGCAGACAAGAGAATAATGGACATGATTC10.9090909090909091No Hit
CTCAAGGAGGAGAAGTTAGAAATTATGATCTTGACCAAAGGTTGATTATC10.9090909090909091No Hit
GTGCCACAGCACACAGATTGGAGGAGTAAGGATGGTGGACATCCTTAGAA10.9090909090909091No Hit
ATGCAGTTGCTGCCGGTTGATTTCTGTTTAATGTCCAATCATAAGTCTGG10.9090909090909091No Hit
CTTATACAATATACGGATTCTTCACATTCCTGAAGTCTGCTTAAAATGGG10.9090909090909091No Hit
CAATATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCA10.9090909090909091No Hit
GATTAGAGGTTTCGTATACTTTGTTGAAACTTTAGCTAGGAGCATTTGCG10.9090909090909091No Hit
GAATTGCCTCTTACCAGTATCCTCAACCCTGATCCTCTCACATTCACAGT10.9090909090909091No Hit
GCACTTTTGGATCTTTTTGGAAATGCCTCTAGAGTTGGTGCATGGGGTTC10.9090909090909091No Hit
ATAGAAGTCTTTAGATCGAATGGCCTAACAGCTAATGAGTCAGGAAGGCT10.9090909090909091No Hit
CATGAAGGGTATGAAGAATTCACAATGGTTGGGAGAAGAGCAACAGCTAT10.9090909090909091No Hit
GAGTAACACGGAGGGAAGTCCCCATATATTACCTAGAGAAAGCCAACAAA10.9090909090909091No Hit
GTGAAAATATGGCACCAGAAAAAGTAGACTTTGATGCCTGCAAAGATGTT10.9090909090909091No Hit
GTCTTATTTATATAGGACTTCTTTTTGCTCATGTTGATTCCCACTAACTA10.9090909090909091No Hit
GGAGATGGCCACCAAAGCGGACTACACCCTTGATGAAGAGAGCAGGGCAA10.9090909090909091No Hit
CTGCATCCCAGGTGTTGCGATAGCCCTTCTTTTTAACTTGCCTCTCTCTG10.9090909090909091No Hit
ACTTTGATGACTGCAAAGATGTTGCAGACCTTAAACAGTATGACAGTGAT10.9090909090909091No Hit
ACACTTATCAATGGATAATCAGGAACTGGGAAATTGTGAAAATTCAATGG10.9090909090909091No Hit
CCTATAATGTTCTCAAACAAAATGGCAAGACTAGGGAAAGGGTACATGTT10.9090909090909091No Hit
ATCATATTCCATGCTTTTGGCTGGACCATGGGCTGCGATTACCACAGACA10.9090909090909091No Hit
TCCTTAGACAGAATCCAACTGAGGAACACGCCGTAGACATATTCAAGGCA10.9090909090909091No Hit
TTCCTCAATCCTGTGGCCAGTCTCAATTTTGTGCTTTTTACATATTTTGG10.9090909090909091No Hit
CCCATCATCATCCAAGCACTGCGAGATGCTGCTCCATGTATTAGATGAGG10.9090909090909091No Hit
ATGTTGACGCTTTCAAGAGATTCAACAAATACATCAACACTGATGCAAAG10.9090909090909091No Hit
TCTGTAGTCTTTGATGAACAATTGAAGAGCCATCTGGGCCGTTGCAGGTC10.9090909090909091No Hit
GCTTAATGCTGGGCCATATCTCTTGTCTTCTTTGCCCAAAATGAGAAATC10.9090909090909091No Hit
GGCAGTGAGTGAGAACTCCATACTTACAAAGTTCCCCACATCAGTATCAT10.9090909090909091No Hit
GCATTAAGCAAATCCCAGGGATCATTAATCAGGCACTCCTCGATTGCTTC10.9090909090909091No Hit
ATATTGTCTTGGTGTATTTCTTTTGTCCAAGATTCAGTATCGAGCCTCCC10.9090909090909091No Hit
GATTTCTGGTGATATATGTAATCCTCGCCAGGAACATTCGAGGATTTTGA10.9090909090909091No Hit
AAGGTATATAAATCTTATTTCGAAAAGGTCGAAAGGTTCAAAAATGGTAC10.9090909090909091No Hit
GCTCCTAGCTAAAGTTTCAACAAAGTATACGAAACCTCTAATCTGCATCC10.9090909090909091No Hit
TCATTAATCAGGCACTCCTCGATTGCTTCATATAGCCCACCAAGATAGAA10.9090909090909091No Hit
GAACAGGAACAGGATACACCATCCACACAGTAAACAGAAAACACCAATAC10.9090909090909091No Hit
GGATTTGTGGCTAATTTTAGCATGCAGCTACACTGCTTTGGAGTGTATGG10.9090909090909091No Hit
CAGTGCTCTTATTAGATAGCCTCTCTTATTCAGTCTTTGTTTTTTCTTCC10.9090909090909091No Hit
TCTCAAATGAGACCTTCCTTTTATAATGAACCCATACAGGTTTGTTTTCC10.9090909090909091No Hit
TTACAATCCTGGAGCTCTTCTTTCTTCTCTTTTCTTATTGCCAGCTCTGA10.9090909090909091No Hit
TTCTTATAACTTCTGTTCGCATGTCGCATCTCCGTGCTTCATTGATCCCC10.9090909090909091No Hit
GAATAAGAGAGGCTATCTAATAAGAGCAATGACATGAAATTCGATGACCA10.9090909090909091No Hit
CTATTGAAGCACCGATTTGAGATAATTGAAGGAAGAGACCGAATCCTGGC10.9090909090909091No Hit
ATAAGGAGGAGAGTTGATACAAACCCTGGCCATGCAGATCTCAGTGCCAA10.9090909090909091No Hit
TCTCAGATTTTATTTTGTTGGCTTTATCAAGATAAAAAAAGTTGACTTAC10.9090909090909091No Hit
TGTCTCCCCTATGGCACCTATATGTGTATCTGTAGTCTTTGATGAACAAT10.9090909090909091No Hit
ATATAAAACTTGACGATAACATTGATGTGTTGATGCTGTCTCTTATACAC10.9090909090909091No Hit
CATGATAAACAATGACCTTGGACCTGCAACGGCCCAGATGGCTCTTCAAT10.9090909090909091No Hit
CTACCTGTACCAGAAGTGCTGCAATCTATTCGAGAAATTTTTCCCTAGCA10.9090909090909091No Hit
GTTCTATCCAGCTTGAATCAGTCAATTCACATGCCTTATTGAATTCATTT10.9090909090909091No Hit
TCATTAATCAGGCACTCCTCGATTGCTTCATATAGCCCCCCAAGATCGAA10.9090909090909091No Hit
CATTTGAATGGATGTCAATCCGACTCTACTTTTCCTAAAAATTCCAGCGC10.9090909090909091No Hit
GAACAAGGACAAACACTCTGGAGCAAAACAAACCAAGCTGGATCAGACCG10.9090909090909091No Hit
TTACCATTCCATTCAAGTCCTCCGATGAGGACCCCAACTGCATTTTTGAC10.9090909090909091No Hit
GTACACTCCCTTCATTATGTATTCAGTAGCCCTGCAGTGGGACACTTCTG10.9090909090909091No Hit
CTCCAATACTCATGTCAGCTGATTCATTTACTCCAGACACTCCAAAGCTG10.9090909090909091No Hit
GCTGGCAAACCATTTGAATGGATGTCAATCCGACTCGCCTTTTCGTAATA10.9090909090909091No Hit
CTGTATGGTCTTTTGGAGGAGGAGACAATGGCAAACTTGGCCATGGAGAT10.9090909090909091No Hit
GACTGGAGCCACACAAATGGGAAAAATACTGTGTTCTTGAAATAGGAGAC10.9090909090909091No Hit
TTCTACAGGACATGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAGTC10.9090909090909091No Hit
GTTGAGGATAATGGTAAGAGGCAATTCACCAGTATTCAATTACAACAACG10.9090909090909091No Hit
CTCCAGAGCAGAAATGAAAAGTGGCGAGAGCAATTGGGACAGAAATTTGA10.9090909090909091No Hit
CAAGAGAATTATGGACATGATTCCAGAGAGGAATGAACAAGGACAAACCC10.9090909090909091No Hit
GGGGAGAAGTTTTATTATTTGGACACTGTCAAATGTCCCAAGCACCTCCC10.9090909090909091No Hit
CTCATTGCATGTACCATCTGCCTAGTCTGATTAGCAACCTCCATGTCCTA10.9090909090909091No Hit
CACCAATACTCAGAAAAGGGAAAGTGGACGACAAACACAGAGACTGGTGC10.9090909090909091No Hit
AGTCTGGGCTCCCAGTAGGGGGCAATGAAAAGAAGGCCAAACTGGCAAAT10.9090909090909091No Hit
TGTCTACTGCTTGTTCCTCAGTTGGATTCTGTCTAAGGATGTCCACCATC10.9090909090909091No Hit
GAAGCAGGCTCCCCGCTGAGCAGGGGGCCAGATGTTGGACTTGATCTCAG10.9090909090909091No Hit
ATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATACT10.9090909090909091No Hit
GCTCAGGGTTGACGATACTGGTAAGAGGCAATTCTCCAGTAATCAAATAC10.9090909090909091No Hit
ATTCGACACTAATTGATGGCCATCCGAATTCTTTTGGTCGCTGTCTGGCT10.9090909090909091No Hit
GAAACAATGGAAGTTGTTCAACAAACAAGGGTAGATAAACTAACTCAACG10.9090909090909091No Hit
CTCTTACTCTCCTTTTTCTTTGAAAGTGGGTTGTTATATCTATTTAATCT10.9090909090909091No Hit
GTTTCATAGGAATATCGTCGTTTCATTGGTGCCCCTCCAGGCAGTGTAAT10.9090909090909091No Hit
CACTACGTCCCCTTGCCCAATTAGCACATTAGCCTTCTCTCCTTTTGCAA10.9090909090909091No Hit
TCCGTATATTGTATAAGTTTGGTCCTCCATCTGATACTAATAGCCCTACC10.9090909090909091No Hit
ACAAAAACCAGCAGAAATGCTACCAAGCATTCAACTGAAGTACATAATTG10.9090909090909091No Hit
TTCACTATGAGAGCAAAATCGTCGGATGATTGGAGCCCATCCCACCAGTA10.9090909090909091No Hit
TTCACAAGACACAGAGATTTCTTTCACAATCACTGGGGACAACACTAAGT10.9090909090909091No Hit
CAAGGGTGTAGTCCGCTTTGGTGGCCATCTCCTCTCCAGTGAATGAAAAG10.9090909090909091No Hit
ATCTAAAGTCGCACTCCAGCACTCGCGAGATACGCACTAAGACCACTGTG10.9090909090909091No Hit
CTACAGATACACATATAGGTGCCATAGGGGAGACACACAAATTCAGACGA10.9090909090909091No Hit
ATCAATAATTGTAGAATCTGGTGACCCGAATGCACTATTGAAGACCCGAT10.9090909090909091No Hit
ATTCCGATCATTCCCATCACATTGTCGATGGATTAAATTCCCCAGTTCTG10.9090909090909091No Hit
ATCCTCAGCCCTGATCCTCTCACATTCACAGTCAATGAGGAAAATTGCCG10.9090909090909091No Hit
ATTCGCCAGTATTCAATTACAACAAGGCACCCAAACGCCTTACAGTTCTT10.9090909090909091No Hit
ATCTTGGAGGTTCCATTGGTTCTCACATATAGGAACATGGGCCTCGACAC10.9090909090909091No Hit
ATACGCTGTTCTTTAAATAGGAGACATGCTATTTAAGACTGCGATAGGCC10.9090909090909091No Hit
CAGTATATGTAACACAACAGGGGTAGAGAAGCCTAAATTTCTTCCTGATT10.9090909090909091No Hit
GGCTAACTTAATATAACAAATTGGAAACATAATCTCAATATGGATTAGAC10.9090909090909091No Hit
CCGGGTTGTAATTGAATACTGGAGAATTGCCTCTTACCAGTATCCTCAAC10.9090909090909091No Hit
GTTCTGGAAAAGCACTTTTGCATCTTTTTGGAAATGCCTCAAGAGTTGGT10.9090909090909091No Hit
CAGCTAATGAGTCAGGAAGGCTATTAGCTTTCTTAAAGGATGTAATGGAA10.9090909090909091No Hit
ATACTCACTACCACTCTCTCCGTGCTGGAGTATTCATCTACTCCCATTTT10.9090909090909091No Hit
ATCTAAAGACTTATATGGTGTTGGCCAATTCAGTTGCTGCCGGTTGATTT10.9090909090909091No Hit
GGCGATCATGGAAAAGAACATAGTACTGAAAGCGAACTTCAGTGTAATCT10.9090909090909091No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers