FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S2_R1_A05_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S2_R1_A05_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTCTTAAGATGAATTATTTTCCTCCTCAGTTCCATGGATCGCACGGG15.0No Hit
GAAGTGAGATACTTGAAGGAAGAGACCGAGACAAGGAGTGAACAGAGTAG15.0No Hit
GCCCCAGATTTGTTAGCATCAGAGTTCAGTGCTTTGGTCCTTGAAGTACA15.0No Hit
GTTGTACTGAATCCCATTCTCGCCCCTTCCCGCCATCCAAAAGAAAGGAA15.0No Hit
GGACCAGGCAATTCGTCCCATGGAATACTCATCGGGTAGTTGGTGGCATC15.0No Hit
TTTGCACGATTGCTCAGTTCATTGATGCTTAATGCTGGGCCATATCTCTT15.0No Hit
CAGGGCAAATATATTCAATATGGAGAGAATAAAAGAACTGAGAGATCTAA15.0No Hit
GTATTATATAATCCTGGCCAGAGATTGGTTAAGAGATGGGGAGATGATTC15.0No Hit
ATATTCAATATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCAGTC15.0No Hit
AAACAAGTTCGTTTTTAAACAATTAGACACTAATTTATTGCCATCCGAAA15.0No Hit
CCCTGCTCCTCTCACATTCACAGTCAATGAGGAAAATTGCATCCTACTCT15.0No Hit
GACTAGGGGAATTTTAGGATTTGTGTTCACGCTCACCGTGCCCGGTGAGC15.0No Hit
GTAAACAATGCTGTGGTAATGCCAGCCCATGGTCCAGCCAAAAGCATGGA15.0No Hit
GTGTGTGTGGTTGTCAAGACTTTTCAATGGTTTTTCAGGATGTGGGATTT15.0No Hit
ATGCTGCAATCTATTCGAGAAATTTTTCCCTAGCAGTTCATATAGGAGAC15.0No Hit
GGTCTAGAGGCTATGGCTTTCCTTGAAGAATCCCACCCAGGAATATTTGA15.0No Hit
CTATATGCGTCTCCACAACTTGAGGGGTTTTCGGCTGAATCTAGAAAATT15.0No Hit
ATTTGAGATAATTGAAGGTAGAGACCGAATCATGCCCTGGCCAGTGGTGA15.0No Hit
GGATGCGGCCTGGGTCATGTTTTCCTGGCGTATCCACTTGGGCCCGTGTG15.0No Hit
ATATGAGGGGGATTGTGGTATTCCTAAATAATCGTTAAAGTTTGGCTGTA15.0No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)