FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S1_R2_A04_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S1_R2_A04_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATACAAGAAGCTCAAAAGAGAAATAACGTTCCATGGGGCCAAGGAGGT22.1505376344086025No Hit
AATATATTCAATATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCA22.1505376344086025No Hit
ACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGG11.0752688172043012No Hit
ATTCAGTATCGAGACTCCCAAGACCGTACTTAGCATGTTGAACATGCCCA11.0752688172043012No Hit
GTTTACAACTGTCCATGCCATTGTGCGATCTCTTCCCTCTATTATTTCAA11.0752688172043012No Hit
GTGAAGAACTTATATGAAAAGGTAAGAAGCCAGCTAAAAAACAGTGCCAA11.0752688172043012No Hit
GGGCAACATCTTCTCCTATTTCATCAAGTTCTATCCAGCTTGAATCAGTC11.0752688172043012No Hit
CTCCTGGAGTGTACATCTGCTCCCAGCACGTCCCTTGGGTTAAGTGCAAC11.0752688172043012No Hit
AGATTGCTGATTCACAGCATCGGTCTAACAGACAGATGGCTACTACCACC11.0752688172043012No Hit
TTCTCGTGGTATTGCCGCCGCCTCGGTGATAGGGGGTTGTAGTCTGAAGG11.0752688172043012No Hit
TACCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATA11.0752688172043012No Hit
ACTCAAGAGAGAACAAGTGAGAGAGAGCACAAACAGGGGTAGAGGCAGAG11.0752688172043012No Hit
ATATAGCCCCCCAAGATCGAAGGTTCCAGGTTCCAGGTTGTCCCTAAGTG11.0752688172043012No Hit
CACTCGGTCTGATCCAGCATCGTTTGTTTTGCTCCAGAGGGTTTGTCCTT11.0752688172043012No Hit
GCTGTGCACCCCGCTACTCCTTCCTGTCTCACGCCAAGCACATTAGTGTT11.0752688172043012No Hit
TCATTCCACTTAGTGTTGTCCCCAGTGATTGTGAAAGAAATCTCTGTGTC11.0752688172043012No Hit
ATCATCGCCAGGAACATTCGAGGATTTTGATTTTCATTCCACTTAGTGTT11.0752688172043012No Hit
GAAGAAGTGCTAACGGGCAACCTCCAAACACTGAAAATAAGAGTACATGA11.0752688172043012No Hit
AAGCAGGTCAAATATATTCAATATGGAGAGAATAAAAGAACTGAGAGATC11.0752688172043012No Hit
ATATAAACACTGCCTGTTCCGCCGGCTACTGGGAGAAACCTTGTTTTACG11.0752688172043012No Hit
ATGCGCAAGCTTGCCGACCAAAGTCTCCCACCGAACTTCCCCAGCCTTGA11.0752688172043012No Hit
GCATTTCAGACATAGACCAGGGTTTCTGGGCTGTTCTGTCCAGAAATTAA11.0752688172043012No Hit
GGGTTACCGGTCCTGACCAATAGTCAGAGACCCGATAGTGGCGGTCACAC11.0752688172043012No Hit
CTCGGGGCGACGACATAAGGGCCCAGCACCTATCTTGGATTAAGTCAAAC11.0752688172043012No Hit
GACAATATACTGGTGGGATGGGCTCCAATCATCCGACGATTTTGCTCTCA11.0752688172043012No Hit
ATGTAAAGTATGAACCTTATTTTTTAGTTCTTAGCTAGTCTGATTTAACT11.0752688172043012No Hit
TTTTCCAATTGTGATCGGATGTATATTCTGAAATGGGAGGCTGGTGTTTA11.0752688172043012No Hit
GGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTAAATGGGAATGGGGA11.0752688172043012No Hit
TACAAACCCTGGCCATGCAGATCTCAGTGCCAAGGAGGCACAGGATGTGA11.0752688172043012No Hit
GTCCCATCTAGGCCTGGCTGCTGCCGTGCTCCGCTGTGGCGGCTGCACTC11.0752688172043012No Hit
GTCAGTAAGTATGCTAGAGTCCCGTTTTCGTTTCATTACCAACACTACGT11.0752688172043012No Hit
ATGTAATCATCGCCAGGAACATTCGAGGATTTTGATTTTCATTCCACTTA11.0752688172043012No Hit
CGTATATAACTAAAATTTAGGTCGTCAGACAGATAATATTATATAAAACA11.0752688172043012No Hit
CAATAGTACGTTCCCTCTTTGATCTCTAACCCTTAAAAATCGGTCAATAC11.0752688172043012No Hit
CCTCCACTCCCCTGGGTGACTATCCGATTGGCCATGTTTCCGATTTGTTT11.0752688172043012No Hit
CAGGTAGACTGTTTCCTTTGGCATATCCGCAAGCGATTTGCAGACAATGG11.0752688172043012No Hit
TAACTGCCTTGATCATGCAATCCTCCTGTCAGAATACCATCGCCACAATT11.0752688172043012No Hit
CTGGCGCGGCGATGGCCACCAAAGCGGACTACACCCGTGCCGAAGAGAGC11.0752688172043012No Hit
CCCCCTCCCTCCCTGCCTTTAGGGCAGGCCTGACCTGGCCGCGCTTGTCC11.0752688172043012No Hit
ACACCATGGCCTCCACCATGCTAGAAATTCCACCCGGTCTCCTATATGAA11.0752688172043012No Hit
GCCCCCAGGGAGACTACCAGTACCAATGAACTGGCGACAGTTGAATAGAT11.0752688172043012No Hit
CTCCAGGATTGTAAAATTGCTCCCTTGATGGTGGCGTACATGCTAGAAAG11.0752688172043012No Hit
GGTTGATTGAGTGTGGGTTGGTGCCCAGGCGGCGCCGCCCCTTATCGCCC11.0752688172043012No Hit
ATATTTGAGAATTCATGCCTTGAAACAATGGAAGTTGTTCAACAAACAAG11.0752688172043012No Hit
AGGTCAGGCAGGCTGGGAGAATGCTGGCTGTACGGAAAGGCTGGAGCTGA11.0752688172043012No Hit
AACACAAGGAGTGCGATCCGGTAGGGTTATACGTCATGCAGAAGTGCTAA11.0752688172043012No Hit
CACCTGTGTTCATAGGAGCATTATTCACAATAACCAAAAGGTGGGCACAC11.0752688172043012No Hit
GACAAGTTAAATTCATTATTTTTGCCGTCTGAGTTCTTCAATGGTGGAAC11.0752688172043012No Hit
TCATACAACAGTCCTGTGATACGTATTATTTTCCTTCCCAAAGCAAGGCT11.0752688172043012No Hit
GGCAAGAGACCTTCTCCAGCTTTAGCCAAGAAACAGAAAGTGCAAAGGGA11.0752688172043012No Hit
GTCAGTAAGTATGCTAGAGTCCCGTTTTCGGTTCATTTACAACACAACGT11.0752688172043012No Hit
GTACTATTGTCTCCCGAAGAAGTCAGTGAAACGCAAGGAACTGAGAAGTT11.0752688172043012No Hit
CTTTTATAATGAACCCATACAGGTTTGTTTTCCGTCTTCCTTCTTTGGTC11.0752688172043012No Hit
CTTCCAGGACATACTTATGAGGATGTCAAAAATGCAGTTGGGGTCCTCAT11.0752688172043012No Hit
GGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCACTCGCG11.0752688172043012No Hit
TCCGTATATTGTATAAGTTTGGTCCTCCATCTGATACTAATAGCCCTACC11.0752688172043012No Hit
CATTAGCCTTCTCTCCTTTTGCAAGATTGCTCAGTTCATTGATGCTTAAT11.0752688172043012No Hit
TAATAGTAGAGCCTGAAGACCCAAACTCACTTTTGAAGCACAGATTTGAA11.0752688172043012No Hit
CCTCAGAACTGTGAGCCTCGTGGGAAGATGCTGCCAGTGCGGAGGGAGAG11.0752688172043012No Hit
GAACAGCGGCCTGAGCTGGGTGGGTGCCCAGACTCTGCAGGACCCTGAGT11.0752688172043012No Hit
AGTTTGTTTCATGTATTCGGATTTCCATTTCATCGACGAACGGGGTGGAT11.0752688172043012No Hit
CCCTTGCCCAATTAGCACATTAGCCTTCTCTCCTTTTGCAAGATTGCTCA11.0752688172043012No Hit
GTTTAGGGGGGACATCCAGCCCAGGTCAGGCAGGCTGGGAGAATGCTGGC11.0752688172043012No Hit
GTCATACTCCTCTGCATTGTCTCCGAAGAAATAAGACCCTTCATTACTCA11.0752688172043012No Hit
TCACCACTGTCCAGGCCATGATTCGGTCTCTTCCTTCAATTATCTCAAAT11.0752688172043012No Hit
CCTGCATCCTTTCCAAGAACTGTATGTCGTTTGGTTGCCTTGTTGTAATT11.0752688172043012No Hit
GAGAAGAACCCCGCACTCAGAATGAAGTGGATGATGGCAATGAGATACCC11.0752688172043012No Hit
GATGATGACTAATTCACAAGACACAGAGATTTCTTTCACAATCACTGGGG11.0752688172043012No Hit
GGTTAGAAGTTAAGAACTTCTGCGGAGCGAAGACCAGCATCGACAGACTG11.0752688172043012No Hit
CACTAAGACCACTGTGGACCATATGGCCATAATCAAAAAGTACACATCAG11.0752688172043012No Hit
GCATATGTCTACGGCTTGTTCCTCAGTTGGATTCTGTCTAAGGATGTCCA11.0752688172043012No Hit
CACTTAACCCAAGGGACGTGCTGGGAGCAGATGTACACTCCAGGAGGAGA11.0752688172043012No Hit
GGATTGTCTTCCCGTTTGTTTGTGCCATCTTCAATTTCTTTCATCAGTGT11.0752688172043012No Hit
GAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATA11.0752688172043012No Hit
GTGGACCATATGGCCATAATCAAAAAGTACACATCAGGAAGGCAAGAGAA11.0752688172043012No Hit
GTCTGGGCTCCCAGTAGGGGGCAATGAAAAGAAGGCCAAACTGGCAAATG11.0752688172043012No Hit
GCACTTAACTGACTGAGCCACCCAGGAGTTCCCATATACCTACGTCTTTA11.0752688172043012No Hit
TCATTACCCTAAGGTATATAAAACTTATTTCGAAAAGGTCGAAAGGTTGA11.0752688172043012No Hit
GTAGCAGGACTGCCTCCAGCTTATCATTCACATGCCCAATGTGAAACTTT11.0752688172043012No Hit
GTCTTTCTCTTTGACAGAAGACTCGGCCTCAATCATGCTCTCAATCTGCT11.0752688172043012No Hit
GCAGGGATAAGGAAAGAAGGCAGGGCAGACATCCCAGGCTGAGCCAGCGA11.0752688172043012No Hit
TACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAAT11.0752688172043012No Hit
ATGTTCAATCGGGGCAACATCTTCTCCTATTTCATCAAGTTCTATCCAGC11.0752688172043012No Hit
CGGTAAGTGGTCAAAGAGGAAAAGGCAGAGAGTAAAATCAAGTGGTAAAA11.0752688172043012No Hit
ATCTAATGTCGCAGTCCCGCACTCGCGAGATACTCACTAAGACCACTGTG11.0752688172043012No Hit
TCGCAGTCCCGCACTCGCGAGATACTCACTAAGACCACTGTGGACCATAT11.0752688172043012No Hit
CAATTGCATCTGTACCTACTTCGCGCTACCTTTCTGACATGACCCTCGAG11.0752688172043012No Hit
GCACATTAGCCTTCTCTCCTTTTGCAAGATTGCTCAGTTCATCGTTTGTT11.0752688172043012No Hit
AGCAGGTACTGATCCAAAATGGAAGACTTTGTGCGACAATGCTTCAATCC11.0752688172043012No Hit
CATCAAGTGCCAAATCTAACAGATTATTTGGCAAAACACTCAGTGAAAGA11.0752688172043012No Hit
GCCATCAGCGGTCAAAGTTCCTGCTGATGGATGCTCTGAAATTAAGTATT11.0752688172043012No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGATTCA50.0145.08
TGCTGAT50.0145.05
CTGATTC50.0145.07
GATTGCT50.0145.02
ATTGCTG50.0145.03
AGGCCAT50.0145.0145
GCTGATT50.0145.06
GATTCAC50.0145.09
AGATTGC50.0145.01
TTGCTGA50.0145.04