FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S1_R1_H09_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S1_R1_H09_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATAGCAAATAGTATCATTCCCACAAATACTTCACTGCATGTGTGAGGA11.0101010101010102No Hit
GTTCCAGGTTCCAGGTTGTCCCTAAGTGCCTGAACAATGAGAAGCAATTT11.0101010101010102No Hit
ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGC11.0101010101010102No Hit
CCATGCTAGAAATTCCAACCGGTCTCCTATATGAACTGCTAGGGAAAAAT11.0101010101010102No Hit
GAAGAAAGAAGAGCTCCAGGATTGTAAAATTGCTCCCTTGATGGTGGCGT11.0101010101010102No Hit
ACTAAGACCACTGTGGACCATATGGCCATAATCAAAAAGTACACATCAGG11.0101010101010102No Hit
CAAGAATTCCCCTTTGGCTTGTGTTGAGAATAGAACGATTCCTCTTGGGA11.0101010101010102No Hit
TATTTAATGTCAGTGCTCTTATTAGATAGCCTCTCTTATTCAGTCTTTGT11.0101010101010102No Hit
CATTAAGCAAAACCCAGGGATCATTAATCAGGCACTCCTCGATTGCTTCA11.0101010101010102No Hit
TTATCAGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGTCATAAAG11.0101010101010102No Hit
GCACAGACCCACGGAGAGGTCCTGGATTATGGAGCCTGCCAAAGCATGCA11.0101010101010102No Hit
TAGTAGAAACAAGGGTGTTTTTTATCATTAAATAAGCTGAAACGAGAAAG11.0101010101010102No Hit
TATGTATTCAGTAGCACTGCAGTGGGACACTTCTGCTGTAAAATAGTTCC11.0101010101010102No Hit
GTGCATTGACTGAAGATCCAGATGAAGGCACATCTGGGGTGGAGTCTGCT11.0101010101010102No Hit
ATTCTACACTGTAGAGACCCATTAGAGCACATCCAGAAACTGATTGCCCC11.0101010101010102No Hit
AGTATGGATAGCAAATAGTAGCATTGCCACAACTACTTCAGTGCATGTGT11.0101010101010102No Hit
CCACAAGAGTTGGATCATGGGGTTCAGACGATTGTTTCCCCTATTCACAA11.0101010101010102No Hit
GATATGGCCCAGCATTAAGCATCAATGAACTGAGCAATCTTGCAAAAGGA11.0101010101010102No Hit
GATCGGAATACTGCCCTACATTACCCCAAGCACGGAGATGACACTGAGAC11.0101010101010102No Hit
CAGTAAACAGAACACACCAATACTCAGAAAAGGGAAAGTGGACGACAAAC11.0101010101010102No Hit
AGGATACACCATGGCCACAGTAAACAGATCACACCAATAATCAGAAAAGG11.0101010101010102No Hit
CAATTCGACACTAATTGATGGCCATCCGAATTCTTTTGGTCGCTGTCTGG11.0101010101010102No Hit
GTTCTTCTCTTGCCTTCCTGATGTGTACTTTTTGATTATGGCCATATGGT11.0101010101010102No Hit
CTCTTCATGTTCTTTGTCCTTGGGATCTTCTCTTCATTTTCAATGTCCTG11.0101010101010102No Hit
ACAATAGAGAGGATGGTGCTTTCTGCTTTTTATGAGAGAAGAAATAAAAA11.0101010101010102No Hit
CCATATGGCCATAATCAAAAAGTACAAATCATGAAGGCAAGAGAAGAACC11.0101010101010102No Hit
GGATTGGGTGATGCCCAGTCCTTGATCGGCTCCGCCGAGATCAAAAGTCC11.0101010101010102No Hit
CAAATGCTCCTAGCTAAAGTTTCAACAAAGTATACGAAACCTCTAATCTG11.0101010101010102No Hit
TTCTTGATCCGTCCAGACTCGAAGTCGACCCTGGCATCAATCCGGGCCCT11.0101010101010102No Hit
TTGGTGGAACAGATCTTCATGATCGCAGCGAACTCGTCTTTCTTGTTACG11.0101010101010102No Hit
AGCCATCTGTCTGTGAGACCGATGCTGTGCATCCGCAATCTGTTCACAAG11.0101010101010102No Hit
ATGCAGCCGTTCGGCTCGAATCCATCTACATAGGCTCTAAAGTTTTCAAG11.0101010101010102No Hit
CATTTACTCCAGCCTCTCCAAAGCTGGGTAGCTCGATGCTAAAAGTAGCC11.0101010101010102No Hit
CGTTTCATTACCAACACTACGTCCCCTTGCCCAATTAGCACATTAGCCTT11.0101010101010102No Hit
GTACCGAGAGATGCATTCGCAATGGAAAGAAATGCTGGATCTGGTATTAT11.0101010101010102No Hit
GTAAAATAGTTCCTCCTCATGCTTGCGATATGTTCAATCGGGGCAACATC11.0101010101010102No Hit
CTACCTCAGTGCATGTGTGAGGAAGGAGTTGAACCAAGATGCATTAAGCA11.0101010101010102No Hit
GAACAGGCAGTGTTTATATTGAAGTGTTGCACTTAACCCAAGGGACGTGC11.0101010101010102No Hit
ACAGTATATGTAACACAACAGGGGTAGAGAAGCCTAAATTTGTTCCTGAG11.0101010101010102No Hit
TCTCAAATGAGACCTTGCTTTTATAATTACCCCATACAGCTTTGTTTTCC11.0101010101010102No Hit
GTGTCAAATGTCCCCAGCACATCCCGCATTTGCTGGAACAGTGTCCTTAC11.0101010101010102No Hit
CGATTGCTTCATATAGCCCCCCAAGATCGAAGGTTCCAGGTTCCAGGTTG11.0101010101010102No Hit
ACAGATAATGCTGTGGTAATGCCAGCCCATGGTCCAGCCAAAAGCATGGA11.0101010101010102No Hit
CTCCTATTTCATCAAGTTCTATCCAGCTTGAATCAGTCAATTCACATGCC11.0101010101010102No Hit
ACCTAGAGAAAGCCAACAAAATAAAATCTGAGAAGACACACATTCACATC11.0101010101010102No Hit
AATATGCACACATATGGAAGTTTGTTTCATGTATTCCGATTTCCATTTCA11.0101010101010102No Hit
GCGAAAGCAGGAGAAATTTCAACATTACCTTCTATTCCAGGACATACTTA11.0101010101010102No Hit
CTGATATGTGGCCTCATTCAGGTTGGAATGCCAAATCATGATATGAGTAA11.0101010101010102No Hit
TATACTTTGTTGAAACTTTAGCTAGGAGCATTTGCGAAAAGCTTGAACAG11.0101010101010102No Hit
CCCTTTGGCTTGTGTTGAGAATAGAACGATTCCTCTTGGGAATCCAGGAA11.0101010101010102No Hit
CTCCAGCACGGAGAGAGTGGTAGTGAGTATTGACAGATTTTTAAGGGTTA11.0101010101010102No Hit
CTTATCTCTTGTTCTACTTCAAGCAGTAGTTGTAAGGCTTGCATAAATGT11.0101010101010102No Hit
ACCCAGGGATCATTAATCAGGCACTCCTCGATTGCTTCATATAGCCCCCC11.0101010101010102No Hit
CCACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACA11.0101010101010102No Hit
AGTAGAAACAAGGCATTTTTTCATGAAGGACAAGTTAAATTCATTATTTT11.0101010101010102No Hit
GATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAG11.0101010101010102No Hit
CTACTTTTCCTATTCCAGCGCAAAATGCCATAAGCACCACATTCCCTTAT11.0101010101010102No Hit
ATATAAACACTGCCTGTTCCGCCGGCTACTGGGAGAAACCTTGTTTTACG11.0101010101010102No Hit
CAAATACACATTCCTGGATTCCAAAGAGGAATCGTTCTATTCTCAACCCA11.0101010101010102No Hit
GTTCTAGAGGCTATGGCTTTCCTTGAAGAATCCCACCCAGGAATATTTGA11.0101010101010102No Hit
TCATTAATCAGGCACTCCTCGATTGCTTCATATAGCCCCCCACCAGCGAA11.0101010101010102No Hit
AAGTGCAACACTTCAATATAAACACTGCCTGTTCCGCCGGCTACTGGGAG11.0101010101010102No Hit
GTATATAAAACTTATTTCGAAAAGGTCGAAAGGTTGAAACATGGTACCTT11.0101010101010102No Hit
TAACAAAAGAGAGGATGGTGAATTGAGATTTTTATCAGATAAGAAAAAAA11.0101010101010102No Hit
GTAATCCCCTGAATCCCTTTGTCAGTCATAAAGAGATTGATTCTGTAAAC11.0101010101010102No Hit
ATACAAACCCTGGCCATGCAGATCTCAGTGCCAAGGAGGCCCAGGATGTG11.0101010101010102No Hit
ATGCTGGGCCAGATCTCTTGTCTTCTTTGCCCAAAATGCGAAATCCTCTC11.0101010101010102No Hit
TTTGAATGGATGTCAATCCGACTCTACTTTTCCTAAAAATTCCAGCGCAA11.0101010101010102No Hit
ATACTCACTAAGACCAATGTTCACAATATGCCCATAATAAAAAAGAAAAC11.0101010101010102No Hit
ATTAGTAGAAACAAGGTCGTTTTTAAACAATTCGACACTAATTGATGGCC11.0101010101010102No Hit
CCTGAAGTCTGCTTAAAATGGGAGCTAATGGATGATGATTATCGGGGAAG11.0101010101010102No Hit
GTCTATATGCGTCTCCACAACTTGAGGGGTTTTCGGCTGAATCTAGAAAA11.0101010101010102No Hit
GTAGATAAACTAACTCAAGGTCGCCAGCCTTATGATTGGACATTAAACAG11.0101010101010102No Hit
TACCCACTTGGTTCAATATCCTCAGGTAGTGGTCCATCAATCGGGTTGAG11.0101010101010102No Hit
GCAGCAGTGTCAGCAGACCCATTAGCATCTCTCTTGGAAATGTGCCACAG11.0101010101010102No Hit
GATTGATTCTGTAAACAATGCTGTGGTAATGCCAGCCCATGGTCCAGCCA11.0101010101010102No Hit
TCTGGGGTGGAGTCTGCTGTCCTGAGAGGATTTCTCATTTTGGGCAAAGA11.0101010101010102No Hit
GTACTATGTTCTTTTCCATGATCGCCTGGTCCAATCGCACGCAAAGAGGG11.0101010101010102No Hit
GTTCATTACCCTAAGGTATATAAAACTTATTTCGAAAAGGTCGAAAGGTT11.0101010101010102No Hit
ATTCGACACTAATTGATGGCCATCCGAATTCTTTTGGTCGCTGTCTGGCT11.0101010101010102No Hit
TAGTCAAACCACATGAGAAAGGCATAAATCCCAATTACCTCATGGCTTGG11.0101010101010102No Hit
ACACTAATTGATGGCCATCCGAATTCTTTTGGTCGCTGTCTGGCTGTCAG11.0101010101010102No Hit
AATTGATGGCCATCCGAATTCTTTTGGTCGCTGTCTGGCTGTCAGTAAGT11.0101010101010102No Hit
ACACTAAGTGGAATGAAAATCAAAATCCTCGAATGTTCCTGGCGATGATT11.0101010101010102No Hit
GTGTTGACTAGCACTGACTCAGGGCCATTGATCTCCCACATCATTGATGA11.0101010101010102No Hit
AAGCACCACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAG11.0101010101010102No Hit
CATTTTCAATGTCCTGTAGCTCTGCTAGCACCTGCTTCCAAGCCATCAGG11.0101010101010102No Hit
CAATGGATTGGGTGATGCCCCATTCCTTGATCGGCTCCGCCGAGCTAAAA11.0101010101010102No Hit
GATGCAGAGAGAGGCAAGTTAAAAACAAGCCATATCGCAGCAGCAGCGAT11.0101010101010102No Hit
ATTTGGAAGTTTGTTTCATGTATTCGGATTTCCATTTCTCGACGAACGGG11.0101010101010102No Hit
TCCCACCAGTATATTGTCTTGGTGTATTTCTTTTGTCCAAGATTCAGTAT11.0101010101010102No Hit
ACTGAGGAGGGAGCAATAGTTGGAGAAATTTCACCATTACCTTCTCTTCC11.0101010101010102No Hit
GAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATA11.0101010101010102No Hit
GAGAAAGCCAACAAAATAAAATCTGAGAAGACACACATTCACATCTTTTC11.0101010101010102No Hit
TTCCTGGCACGGTCAGCACTCATTCTGAGGGGATCAGTTGCACATTAATC11.0101010101010102No Hit
ATCAGGAACTGGGAAATTGTGAAAATTCAATGGTCACAATATCCCACAAT11.0101010101010102No Hit
CAGTTCATTGATGCTTATCTCTTGTCTTCTTTGCCCAAAATGAGAAATCC11.0101010101010102No Hit
GCATCACTGAGACCTGGGATGATGATGGGCATGTTCAACATGCTAAGTAC11.0101010101010102No Hit
CTGTAGAGACCCATTAGAGCACATCCAGAAACTGATTGCCCCCAGGGAGA11.0101010101010102No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTCAG50.0145.07
CAGCAGT50.0145.02
AGGATTA50.0145.0145
TGTCAGC50.0145.08
AGCAGTG50.0145.03
GCAGTGT50.0145.04
GCAGCAG50.0145.01
AGTGTCA50.0145.06
CAGTGTC50.0145.05
GTCAGCA50.0145.09