FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S1_R1_G09_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S1_R1_G09_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGTAGTCCATGTTCTTTTACCGGAAATCCTTGATCTGGTATTTCACTT10.8064516129032258No Hit
TAGCATCACATTTCTTAAGTTAATGTTGGGGAATATACTGGGGTTTCTTT10.8064516129032258No Hit
CACTGTGGCATTTGCCAAGGCATTCTCCCATCTGGAAGCAGGTCCAGATA10.8064516129032258No Hit
TTTTAAAGAAGGACTAAAGTAGAAAATAAGATACAGAAAGATTTACATCA10.8064516129032258No Hit
GTTGAACTCTTTACCTACTGCTGTGAACTGTGTATTCATCTTTTCAATAA10.8064516129032258No Hit
TCCAAACTCAGTTGCCCAAGTCAGAAGCTGTACATGCCAGTCTGGACTTC10.8064516129032258No Hit
ACACAAGCAGTCAGAAAGAGAGATGACTGCCAGCTTCAGAGTCAGCAAAA10.8064516129032258No Hit
CGAGCAGTCAATTGCTGAGGCAATAATTGTGGCCATGGTATTCTCACAGG10.8064516129032258No Hit
GTTTTCAATTTCTTTGGGTAAATAGTCAGTGACTACTGAATCATGGGTGA10.8064516129032258No Hit
AGCGAAAGCAGGACATTCAGAGTGAGGAGAAGCTTCCAAGAACTAAATAC10.8064516129032258No Hit
CCATCCTACAACATAGCTTGTATGTCAAAGAAAGAAACATTATATGTTAG10.8064516129032258No Hit
TCCTGTACCTGGGCAACGTCACGTACAAGAAGAGAGCCACGGGCCGAGAC10.8064516129032258No Hit
AAATAAGAGTACATGAAGGGTATGAAGAATTCACAATGGTTGGGAGAAGA10.8064516129032258No Hit
CCTCTCTACAGAATGTAGAATGAGTGAGTACTCAGGGATTAATATTTATG10.8064516129032258No Hit
GTATTAATGTATTCCCCCTTCATTATATATTCTGTGGCTCTGAAATGAGA10.8064516129032258No Hit
GAAATAAACCCCCAATCATACAGTCAATCTTCAACAGAGAGGCATGAATT10.8064516129032258No Hit
GACCCCTACAATGCTATACAATAAAATGGAATTTGAGCCATTTCAGTCTC10.8064516129032258No Hit
GTGTATGTATGGCACGTGTGACAGGAGTGTGGCTGAGACAGGGAGGGAGA10.8064516129032258No Hit
GAGCACAGCCCAGCGGAACACGGCCACAGGGTCCATGCCGATGAGCTCCC10.8064516129032258No Hit
ATATTTGAGAATTCATGCCTTGAAACAATGGAAGTTGTTCAACAAACAAG10.8064516129032258No Hit
GTGTCAGCAGACCCATTAGCATCTCTCTTGGAAATGTGCCACAGCACACA10.8064516129032258No Hit
ACTTAGTGTTGTCCCCAGTGATTGTGAAAGAAATCTCTGTGTCTTGTGAA10.8064516129032258No Hit
GGCCAGTAGGAGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAG10.8064516129032258No Hit
TGTTTCAACCTTTCGACCTTTTCGAAATAAGTTTTATATACCTTAGGGTA10.8064516129032258No Hit
CTCACAAGAAGATTGTATGATAAAGGCAGTTAGAGGTGATCTGAATTTCG10.8064516129032258No Hit
CGGAGAAGCAGGCTTCCCGCTGAGCAGAGCGACGGACATGGGGCTCGATC10.8064516129032258No Hit
ATGCTGGGAGTCAGCAATCTGTTCACAGGTTGCGCATATTAGGCCAAATG10.8064516129032258No Hit
CAATTCGACACTAATTGATGGCCATCCGAATTCTTTTGGTCGCTGTCTGG10.8064516129032258No Hit
CCCGGAGGGGCTGTGAAGGCCTGGAGCTTCCTTAAAAAACATACTTTGGT10.8064516129032258No Hit
TCCTTGCTAAGTCCAATGTTAGGGACTGTTTACTGCTACTTTGAGACGTA10.8064516129032258No Hit
GGAGCGGAGCTGGCACCCACATCGGCCTCCACCCTTGCCGCAGAGAGCAG10.8064516129032258No Hit
CCTGGAAGGACACTTATTCTGGTCTTGCACTTTCCATCATCTTTATGAGT10.8064516129032258No Hit
GTCCAGAGCGATTAAAAAAGCTTGTGAATTCAATTGACCATGTGTTATTT10.8064516129032258No Hit
ATCATGGAAAAGAACATAGTACTGACAGCGAACTTCAGTGTAATCTTTAA10.8064516129032258No Hit
CTGGGAAATTGTGAAAATTCAATGGTCACAAGATCCCACAATGTTATACA10.8064516129032258No Hit
AATAAAGTCTTTATTAAGAAAATAAAATAAAATGGACCATATTCTCCTTT10.8064516129032258No Hit
ACCCAGGCGTCCCAGTTGTTTATTTTTAAATAAACACCTCCCACCCCCCT10.8064516129032258No Hit
GCATCAGAATGAACAAGGATCTGGCTATGCTGCGGATCAAAAAAGCACAC10.8064516129032258No Hit
GGCATAGGCTCACTAAAAGATAGATGTTAATTTAGGATTATAGAACAGTT10.8064516129032258No Hit
ACATCATCATTTCTCACTTCTCCTCCTGGAGTGTACATCAGCTCCCAGCC10.8064516129032258No Hit
CTCAGAACCATTTGTTGTAAAGACCTTTTCACCCATTCAATTGTCGTTTC10.8064516129032258No Hit
GGCCCAGTGTGGGGGCCTGGAGTGCATGCTCAACAGACTGGCTGGGAGCA10.8064516129032258No Hit
ATTTGAAGCAATCTGGACCCCTCTTGTGGAAAGCTTTCCTCTTGGAATCA10.8064516129032258No Hit
TCTACATAGGCTCTAAAGTTTTCAAGGCTGGGGAAGTGCGGTGGGAGACT10.8064516129032258No Hit
GAATGTGAGAGGATCAGGGTTGAGGATACTGGTAAGAGGCAATTCTCCAG10.8064516129032258No Hit
CAGTGATGCTGTGCCATCTATTAGAAGAGGCCTTATTTTATCATTTTTCT10.8064516129032258No Hit
ATACAAAGAGAATATAGTCAAAGCACACCATACAAAGTGTCAGATACTAA10.8064516129032258No Hit
ATGGTGGCGTACATGCTAGAAAGAGAATTGGTCCGTAAAACAAGGTTTCT10.8064516129032258No Hit
AGTACACAACTGCTGTATCCGAATACCACTTCCAGACCCTCGAGGGTCGT10.8064516129032258No Hit
TTGTAATCCCCTGAATACCAATGTCAGTCATAAAGAGATTCATTCTGTAA10.8064516129032258No Hit
GTAATGATGAGTCTGGTATTTTGTATCTCTTTTTTTTTTTTAGATTAAGT10.8064516129032258No Hit
GGGGAGGGACTACCACTATATGATGCTATCAAGTGCATGAAGACATTCTT10.8064516129032258No Hit
GTGATAGCTAGAGATTTATCATCGTAGGTATGATTTTACTTTTATTTTTG10.8064516129032258No Hit
CAACACTTCAATATAAACACTGCCTGTTCCGCCGGCTACTGGGAGAAAAC10.8064516129032258No Hit
CTTCAGGTCAATGCTTGCTAGCATTTCTGCTGGTATTTGTGTTCGAATCT10.8064516129032258No Hit
AGGGGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAATCTATT10.8064516129032258No Hit
GGCAAACCATTTGAATGGATGTCAATCCGACTCTACTTTTCCTAAAAATT10.8064516129032258No Hit
GGTCTCCCTCTGCTTTGGAACAGTAGGGAACTGAGGCACAGCGTGGCTTA10.8064516129032258No Hit
GGCCGGCGGGGTGGACAGGCCGCTGTACAGGCTGGGGGCCAAGGATCTGC10.8064516129032258No Hit
AAGCTTTGATCAACATCATCATTCCTCACTTCTCCAACTTGAGTGTAGAT10.8064516129032258No Hit
TGCCCAATTAGCACATTAGCCTTCTCTCCTTTTGCAAGATTGCTCAGTTC10.8064516129032258No Hit
CAAAAAGGAGAGTAAGAGACAACATGACCAAGAAGATGGTCACGCAAAGA10.8064516129032258No Hit
CTTCTTTCTTGATCCGTCCAGACTCGAAGTCGACCCTGGCATCAATCCGG10.8064516129032258No Hit
GAATTTGTGTTCGAATCTTGATTCTTTTACTCTCGAACATCTACCCTTTC10.8064516129032258No Hit
GATTACATATATCACCAGAAATCAACCCGAGTGGTTCAGAAACATCCTGA10.8064516129032258No Hit
CCTACAGTCTCAGCGAGGCTATCCCCGCCCGCGACTCCATGGCCAAGTCC10.8064516129032258No Hit
CACACAGGCAGGCAGGCAGGACTTGTGAGCAACTGACCCTCTTAATATGA10.8064516129032258No Hit
GGCTACGGCAGGTCCATACACACAGGCAGGCAGGCAGGACTTGTGAGCAA10.8064516129032258No Hit
ATTTGTTCTAGTTCTGTGAGAAGTGTTATTGGGATTTTGATAGGTATTAC10.8064516129032258No Hit
GAGAAAGCCACATGCAGCAAGGAGCTGAGATACGGTCTAATAAACTCAGA10.8064516129032258No Hit
GCTTAGGCTTAACAGTAGCCTTTCAAAGAACCACCAGTTTGGAGGCAGCA10.8064516129032258No Hit
GCCATCTATCATACAGAAAATGCTTATGTCTCTGTAGTCTCTTCACATTA10.8064516129032258No Hit
CCTTTAAGAAATCTATTAGCCTTCCTGACTCATTAGCTGTTAGGCCATTC10.8064516129032258No Hit
GTTCCTGTTGATATTCTTCCCTCATGGACTCAGGCACTCCTTCCGTAGAA10.8064516129032258No Hit
GGTTGGGACACTTCTGCATCTTGCCCGGTTTACTGCCCCCGCTTGGAGGT10.8064516129032258No Hit
CTCATGGTTAGCATCATTCATAAATACATGAAATACATCAGATGCTTTGG10.8064516129032258No Hit
TACCACTATATGATGCGATCAAGTGTATGAGAAAATTCTTTGGATGGAAA10.8064516129032258No Hit
CTTCCCGGGTCATGGACGGTCTGTTCCATGGCAGAGGGGTGTGGGAGCCC10.8064516129032258No Hit
CTCCAAAGCTGGGTAGCTCCATGCTAAAATTAGCCACAAATCCATAGCGA10.8064516129032258No Hit
TGCCCATCATCATCCCAGGACTCAGTGATGCTGTGCCATCTATTAGAAGA10.8064516129032258No Hit
CATATACACAGAATGTGGCTTAAACATGTGATCATAGGTCTAAGCGGCCA10.8064516129032258No Hit
TTGTATAACATTGTGGGATCTTGTGACCATTGAATTTTCACAATTTCCCA10.8064516129032258No Hit
AGTTGATACAAACCCTGGCCATGCAGATCTCAGTGCCAAGGAGGCACAGG10.8064516129032258No Hit
GCTGTGGGATCAAACCCAATCAAAGGTAGGGCTATTAGTATCAGATGGAG10.8064516129032258No Hit
TATTTAAAGCGACGATAAATACATTTGAAAAAAAGACGATCAGTAATCCA10.8064516129032258No Hit
ATACACACAGGCAGGCAGGCAGGACTTGTGAGCAACTGACCCTCTTAATA10.8064516129032258No Hit
TCACTGGGGACAACACTAAGTGGAATGAAAATCAAAATCCTCGATTGTTA10.8064516129032258No Hit
AAGCAAGAAATCCTTCCAAGGTACAGGTACCTGGGGTTGCTCTGCGCCCT10.8064516129032258No Hit
ATTTTGGATAGTCATAAGTGCCATTTTTCCGCCTTTCCATGCATTCATTG10.8064516129032258No Hit
CTACTGGGAGCCCAGACTGTTCAAGCTTTTCGCAAATGCTCCTAGCTAAA10.8064516129032258No Hit
GCCGAAAACCCCTCAAGTTGTGGAGACGCATATAGACTGTTGAATACAGA10.8064516129032258No Hit
TCCCAACACTGTGTCAATCTTTCAGGTAGATTGCTTCCTTTGGAATGTCC10.8064516129032258No Hit
TCCTCCCATAAGAATCTCTACCGTTACAATCAAACGCTGAGCACACCCCT10.8064516129032258No Hit
ATTTCTGACCGGCTGGAAACTCTAATATTACTAAGGGCTTTCACCGAAGA10.8064516129032258No Hit
GCACTTAACCCTAGGGACGTGCTGGGAGCAGATGTACACTCCAGGAGGAG10.8064516129032258No Hit
TAGTAGTATCAAGGTCTCTAATCGGTTTAAGATTACACTGAAGTTCGCTT10.8064516129032258No Hit
GGGCTTTCTGTGTATTTGTTTCTATATCAGTCCATTTGGGCAGCAACCCC10.8064516129032258No Hit
CTACAGGACATTGAAAATGAAGACAAGATCCCTAGGACAAAGAACATGAA10.8064516129032258No Hit
GCGCCAGAGCAGTTAGGAGAGGAAGCATGATCCCTGCCGGAGGGAGGAAG10.8064516129032258No Hit
ATATTAGAGAAGATCTAAATAATTGGTAAAAACATCCTGTGTTCATGGAC10.8064516129032258No Hit
GTACTTCCAAGGGGGAAGCTTTCCACTAGAGGAGTACAAATTGCTTCAAA10.8064516129032258No Hit
ATAAGACCCTTCATTACTCATGTCAAAGGAAGGCACGATCGGGTTCGTTG10.8064516129032258No Hit
GTGTTGGCCAATGCAGTTGCTGCCGGTTGATTTCTGTTTAATGTCCAATC10.8064516129032258No Hit
TAAGTATTCTTTCACAAACATTTACCTTTAAACACTGAAGCAATTGTAAA10.8064516129032258No Hit
TTTCATGCCTGATTAGTGGATTGGTGGTAGTAGCCATCTGTCTGTGAGAC10.8064516129032258No Hit
GGCCATGGTATTCTCACAAGAAGATTGTATGATAAAGGCAGTTAGAGGTG10.8064516129032258No Hit
GAGTTAATCAGAATGATCAAACGTGGAATCAATGACCGAAATTTCTGGAG10.8064516129032258No Hit
ATATCAACACTGCCTGTTCCGCCGGCTACTGGGAGAAACCTTGTTTTACG10.8064516129032258No Hit
GTCTGAAGGGCCAGTATTCTTTGGGGAAAGCAGACCGTAGGAGAATCCAC10.8064516129032258No Hit
GCTCCCTGCAGAGCAGGGCAAGCACGATATGGGCCTCTATCCCGCGACTC10.8064516129032258No Hit
TTTCCAAATAAGTTTTATATACCTTAGGGTTATGATCTGTACTTGTTGTT10.8064516129032258No Hit
AGACCGTACTTAGCATGTTGAACATGCCCATCATCATCCCAGGACTCAGT10.8064516129032258No Hit
GTCCGATATAAATAAGACTGGGAGATTTGACTTCTCTAGCTTTTTTTATC10.8064516129032258No Hit
TCCTTTGACTGCAGCGCCAGCAGCTCCAGATCTCCTAGGGAGAGTTGAAC10.8064516129032258No Hit
CCCCTATGTACTTTAAATGGATGAACTGACAGGGACACCCGGGTGGTTCA10.8064516129032258No Hit
CTACTTAATTATGTAACTTTTGAAAGTGGTTGTACAATATGCATTCAGGC10.8064516129032258No Hit
ATCTTTTAGTGAGCCTATGCCTCTGGGCTGTGAACTTCACGAAGTTTCTC10.8064516129032258No Hit
CTTTCTATATTTTCTTATCTACTCTCGGCTTTCTAAAAACTTTTTCATCA10.8064516129032258No Hit
GATATTGGGTACAAAGCTCCAGAAAGCTCCACACCTGGCTAAGTTATTCG10.8064516129032258No Hit
ATCCAGATGAAGGCACATCTGGGGTGGAGTCTGCTGTCCTGAGAGGATTT10.8064516129032258No Hit
AGCTAGGCTTAGTTTTTGGGGTGAGGGCACAGAAGGCACACTCTGCAGAC10.8064516129032258No Hit
TGCAGGTCCGGTAGAATCTGTCCACGCCGGCGTGTAGTGCCTCATGGTTT10.8064516129032258No Hit
CCTGAGAGAAATGAGCAAGGGCAAACACTATGGAGTAAAATGAATGATGC10.8064516129032258No Hit
CAACACCTGGGATGCAGATTAGAGGTTTCGTATACTTTGTTGAAACTTTA10.8064516129032258No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)