FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S1_R1_C05_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S1_R1_C05_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGAGGGAGCAATAGTTGGAGAAATTTCACCATTACCTTCTCTTACAGG15.555555555555555No Hit
ATATAAAACTTATTTCGAAAAGGTCGAAAGGTTTAAACATGGTACCTTCG15.555555555555555No Hit
CTTACTATGTTTCTAGCAGCGATAATCAAACTTTGGTCAACATCATCATT15.555555555555555No Hit
CGCGAGATACTCACTAAGACCACTGTGGACCATATGGCCATAATCAAAAA15.555555555555555No Hit
AGAAACAAGGGTGTTTTTTATCATTAAATAAGCTGAAACGAGAAAGCTCT15.555555555555555No Hit
TATCATTCCATTCAAGTCCTCCGATGAGGACCCCAATTGCATTTTTGACA15.555555555555555No Hit
GTAGAAACAAGGTCGTTTTTAAACAATTCGACACGAATTGATGGCAAACC15.555555555555555No Hit
GCTGCATTGAGGGCAAGCTTTCCCAAATGTCAAAAGAAGTGAACGCCAAA15.555555555555555No Hit
GTTCTAGAGGCTATGGCTGTCCTTGAAGAAGCCCACCCAGGAATATTTGA15.555555555555555No Hit
AACTACTTCAGTGCATGTGTGAGGAAGGAGTTGAACCAAGATGCATTAAG15.555555555555555No Hit
GTGCACCCCAGCTCAACCCGATTGATGGACCACTACCTGAGGATAATGAA15.555555555555555No Hit
CTCTAGCTCTATGTTGACAAAATGACCATCGTCAACATCCAAAGCACTCT15.555555555555555No Hit
CTTATTTTCAGTGTTTGGAGGTTGCCCGTTAGCACTTCTTATTCTTTCTT15.555555555555555No Hit
GACTTCCCTCCGTGTTACTCCAATTTCAATGAACCGGTTCTCTTTGTAAT15.555555555555555No Hit
CCTGTGAGAATACCATGTACACAATTATTGCCTCAGCAATTGACTGCTCG15.555555555555555No Hit
GTTTGGAGGTTGCCCGTTAGCACTTCTTCTTCTTTCTGGAGTGATGATCC15.555555555555555No Hit
CCTTTGTTCGAGTCATGATTGGGCCATGAACTTGTCTTGGGGAATATCTC15.555555555555555No Hit
GAGTAACACGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAACAAA15.555555555555555No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)