FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S1_R1_B01_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S1_R1_B01_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGATGACAAATTCACAAGACACAGAGATTTCTTTCACAATCACTCGGG12.1739130434782608No Hit
GGCATGGGCAAATGCTGGAGTGCAAAATTACTCTATGTCAGGTCGAATGC12.1739130434782608No Hit
GGGCATGTGTGAGGAAGGAGTTGAACCTCGATGCATTAAGCAAACCCCAG12.1739130434782608No Hit
TAACAACCCACTTTCAAAGAAAAAGGAGAGTAAGAGACAACATGACCAAG12.1739130434782608No Hit
CGGTTGCTTTCTGTTTAATCTCCAATCATAAGTCTGGCGAACGTGAGGTA12.1739130434782608No Hit
GAGCATGGAACCTATAATTTTATAAAACAAAATGGCAATACTAGGGAAAG12.1739130434782608No Hit
CCAGTGCAAATCCAGCGATTCAATTGCACCACTAGTCAATATAGCAATTA12.1739130434782608No Hit
GTATAAAAAAGGTAGTTTTTAAACAATTAGAAACTAATTGATTGCCATCC12.1739130434782608No Hit
TGAGAAATCCTCTCAGGACAGCAGACTCCACCCCAGATGTGCCTTCATCT12.1739130434782608No Hit
ATACAAGAAGGAGTGGACAGATTCTACCGGACCTGCAAGTTAGTGGTCAT12.1739130434782608No Hit
GCATTAGAGAACACAAACTGGTTGCCATAATCGAAAGAGCTAGGCGAAGA12.1739130434782608No Hit
GTCAATGCACCTGCATCCTTTCCAAGAACTGTAAGTCGTTTGGTTGCCTT12.1739130434782608No Hit
AAGATTAAATCAAATCATCGTAGAGAATTCGACAAAGAAAATCAAAGAAT12.1739130434782608No Hit
CCCATTAGCATCTCTCTTGGAAATGTGCCACAGCACACAGATTGGAGGAG12.1739130434782608No Hit
AAAGCAGGCAAACCATTTGAATGGATGTCAATCCGCCTCTACTTTTCCTA12.1739130434782608No Hit
GTGTTACTCCAATTTCAATGAACCGGTTATCTTTGTAATCATACAAATCA12.1739130434782608No Hit
CCAGGATTGTAAAAATGCTCCCTTGATGTTGGCGTACATGCTACAAAGAC12.1739130434782608No Hit
GGGTTGGTGCATTCAGTATGAGAGCTAATTCGTCGGCTGCTGGGAGCCCA12.1739130434782608No Hit
CTATTAGAAGCTGCCTTAGTGTCGCCCTTTTCGTATGTGGTGATGACGTG12.1739130434782608No Hit
GTTGCTTCATTGCAGTACTTCAGGTCAATGCTTGATAGCATTTCTGCTGG12.1739130434782608No Hit
CAACACGAAGGGGAATGAAAATCAAAATCATAGAATGGTAATGGCGATGA12.1739130434782608No Hit
CTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAGTCCT12.1739130434782608No Hit
ACATTTGCTTATCATTGGGATCAGCTGAAAGTCATCCATGGCTGCACAGG12.1739130434782608No Hit
GTCCAAAATGAATTCAATAAGGCATGTGAATTGACTGATTCAAGCTGGAT12.1739130434782608No Hit
GCATCCTACTCTGTTCTGGTGGGGCAGCAGCAAAGGGGAGAAGTTTTATT12.1739130434782608No Hit
GAATACCATGGCCACAATTATTGCCTCAGCAATTGACTGCTCGTCTCTCC12.1739130434782608No Hit
GTGTACATAAATACGGCCTTGCTCAATGCATCCTGTGCAGCCAAGGATGA12.1739130434782608No Hit
GAATAGACCTATTCCAATAACTCAAAAACAGCCAACTGGGCCGACTGATG12.1739130434782608No Hit
GGCGTGGTGTCGTCCTCAAGAATGGTTAAATTTTTGCGTTCACTTCTTTT12.1739130434782608No Hit
CACCTGCATCCATTACAAGAACAGTAACAGTATAGCTATACGATGTTTAA12.1739130434782608No Hit
TTACAAACACTACGTCACATTGACCAATTAGCACATTATCCTTCTATCCT12.1739130434782608No Hit
TAACTTATCTTCAAGGCAATAATGATGAGTATTTCCAAACTCCATTTGGG12.1739130434782608No Hit
GGCGATGATTACATATATCACCAGAAATCAACCCGAGTGGTTCAGAAACA12.1739130434782608No Hit
TTACAAAGTCTTCCCCGATAATCATCATCCATTAGCTCCCATTTTAAGCA12.1739130434782608No Hit
ATTGTCTACCGAAGAAGTCAGTGAAACGCAAGGAACTGAGAAGTTGACAA12.1739130434782608No Hit
GTTCAGAAACATCCTGAGCATGGCACCTATAATGTTCTCAAACAAAATGG12.1739130434782608No Hit
CCACATTCACGTATACTGTAGATCCTCCATAAAGAAATGGAACAGGAACA12.1739130434782608No Hit
GTACCATGATATTCCATTATCGTGATTCACCCTATCACGCGAGCAGTGGT12.1739130434782608No Hit
ATCTAATGTCGCAGTCCCGCACTCGCGAGATACTCACTAAGACCACTGTG12.1739130434782608No Hit
GAAGTCCTCGTGCTATGGGGCATTCACCATCCATCTACTAGTGCTGACCA12.1739130434782608No Hit
GCTTGCCCCCAGGGAGCCTACCAGTCCCAATGAACTGGCGACAGTTGATT12.1739130434782608No Hit
GTTGAAAACAGTATTTGCAAGAAAACTCCTGAAGAGTATCCAAATAATGA12.1739130434782608No Hit
CATCATTGATGACGAATAAGTAATTGTCACCTTCTCAGTTCCTTGCGTTT12.1739130434782608No Hit
TAAAAGGATGCATTGATCACTGCCTTATTGATGTACAATAACTTCATTAT12.1739130434782608No Hit
CTGTTACCCCAATACTCATGTCAGCTGATTCATTTACTCCAGACACTCCA12.1739130434782608No Hit
ACCCTATTGCTGCCTTGCATATGTCTACGGCTTGTTCCTCAGTTGGATTC12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)