FastQCFastQC Report
Fri 2 Oct 2020
HTGTLBGXG_n01_S1_R1_A01_FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTGTLBGXG_n01_S1_R1_A01_FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCATCCTTACTCCGCCAATCTGTGTGCTGTGGCACATTTCCAAGAGA12.631578947368421No Hit
CTTATCGCTCACATAGACATCTCCCAGCTGAGGCTCATGACGGGCAGTAA12.631578947368421No Hit
CACTACATACTGTCAGTTATTATGCAGGTGTACTTAAACAAAGCCACTCC12.631578947368421No Hit
CCCCCCTTCTGGAGAAGCACTTTTGCATCGGTTTGGAAATGCATCAAGAG12.631578947368421No Hit
TGATTGGACATTAAACAGAAATCAACCGGCAGCAACTGCATTGGCCAACA12.631578947368421No Hit
CCTATATGAACTGCTAGGGAAAAATTTCTGGAAGAGATTGCCGCACTTCT12.631578947368421No Hit
GGTGTGTTCCTGGCCTGGCATTTTGCTGTGTGTGATCCCTCTGAGCGAGA12.631578947368421No Hit
CTCCTGCTTGTATTCCCTCATGGTTTGGTGCATTCACTATGAGAGCAAAA12.631578947368421No Hit
GTATAAGTTTGGTCCTCCATCTGATACTAATCGCCCTACCTATGATTGGC12.631578947368421No Hit
AATATGTTCAATATGGAGATAATAAAAGATGAGACAGCTCTAATGAAGGA12.631578947368421No Hit
GGGGAAAAACACAAATTCAGACGAGAAGATCATTAGAGTTAAAGAAGCTG12.631578947368421No Hit
ACCTAGAGCAAGCCAACAAAATAAAATCTGATAAGACACACATTCACATC12.631578947368421No Hit
ATATACAACCGGAGGGGAACAGTGACCACAGAAGCTGCTTTTGGTCTAGT12.631578947368421No Hit
CCCCAATGTTATACAACAAAATGGAATGTGACCCATTTCAGTCGCTTGTC12.631578947368421No Hit
CGAAAGAAGCCAGCTAAAAAACAATGCCAAGGAAATTGGAAACGGATTAT12.631578947368421No Hit
ATTATGAACAGTTAAACTTATAACTCGTGACCTGCTGCTGTCTGACTTAC12.631578947368421No Hit
TTGTTGATTCATTGAAGTACTTCAGGTCAATGCTTGCTAGCATTTCTGCT12.631578947368421No Hit
ATACTTATGAGGATGTCAAAAATGCAGTTGGGGTCCTCATCGGAGGACTT12.631578947368421No Hit
CCCATAATGTTCTCAAACAAAATGGCAAGACTAGGGAAAGGGTACATGTT12.631578947368421No Hit
TCATAAGTCTGGCGACCTTGAGTTAGTTTATCTACCCTTGTTTGTTGAAC12.631578947368421No Hit
GAGCAACAGCTATTCTCAGAAAGCCAACCAGGAGATTGATCCAGTTGATA12.631578947368421No Hit
CAGCCGGGCCACTAGATTCAATAGGGAGATAATAAAAGCACTGCGAGATC12.631578947368421No Hit
GTGCTAGTCAACACTTATCAATGGATAATCAGGAACTGGGAAATTGTGAA12.631578947368421No Hit
GGCCAAACTGGCAAATGTTGTGAGAAAGATGATGACTAATTCACAAGACA12.631578947368421No Hit
ATCTCAGTGCTCAAAATACATACCCTCAGTTATACAGAAGTTGATTTTTC12.631578947368421No Hit
GTATCATTTCTCAAATGAGACCTTCGTTTTTTAATGAACCCATACAGGTT12.631578947368421No Hit
ATGGGAGCTAATGGATGATGATTATCGGGGAAGACTTTGTAATCCCCTGA12.631578947368421No Hit
CTCTGGAATCATGTCCATTATTCTCTTGTCTGCTGTAATTGGGTATCTCA12.631578947368421No Hit
GTATATTGTCTTGGTGTATTTCTTTTGTCCAAGATTCAGTATCGAGACTC12.631578947368421No Hit
CATTTGAATTCACAAGCTTTTTTTATCGCTATGGATTTGTGGCTAATTTT12.631578947368421No Hit
ACAATATACTGGTGGGATGGGCTCCAATAATGCGACGATTTAGCTCTCAT12.631578947368421No Hit
CCCTGGGGCCAAAAATAAGTGTAATGAAAATCAAAATAATCGAATGTTCA12.631578947368421No Hit
ATGGTATTCTCACAGGAGGATTGCATTATCAAGTCAGTTAGGGGCGATCT12.631578947368421No Hit
CCGATAATCATCATCCATTAGCTCCCATTTTAAGCAGACTTCAGGAATGT12.631578947368421No Hit
CACCAATACTAAGAAAAGCGAAAGTGGACGACAAACACAGAGACTCTTTC12.631578947368421No Hit
ATTGAAGCACCTATATGAGATAAGTTAAGGAAGAGACCGAATCATGGCCA12.631578947368421No Hit
TTCACTGAGGAGGGAGCAATATTTGGAGACATTTCACAATTACCTTATCT12.631578947368421No Hit
CTATTTAATACAAACAAAGAAAAAAAAGGAAATACATATAAAAACCCACT12.631578947368421No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)