[2021-05-13 06:45:22,769] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2021-05-13 06:45:22,769] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2021-05-13 06:45:22,769] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2021-05-13 06:45:22,770] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2021-05-13 06:45:22,770] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2021-05-13 06:45:22,770] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HTGM5AFX2/merged
[2021-05-13 06:45:24,279] multiqc [WARNING] MultiQC Version v1.10.1 now available!
[2021-05-13 06:45:24,279] multiqc [INFO ] This is MultiQC v1.9
[2021-05-13 06:45:24,280] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HTGM5AFX2/merged
[2021-05-13 06:45:24,280] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HTGM5AFX2/merged
[2021-05-13 06:45:24,280] multiqc [INFO ] Template : default
[2021-05-13 06:45:24,280] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2021-05-13 06:45:24,280] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HTGM5AFX2/merged
[2021-05-13 06:45:24,280] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2021-05-13 06:45:24,280] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-6775508/tmpjypb5lq4
[2021-05-13 06:45:24,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-13 06:45:24,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-05-13 06:45:24,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n01_N1_02_fastqc.html
[2021-05-13 06:45:24,466] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n01_N1_02_fastqc.html
[2021-05-13 06:45:24,507] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n02_N1_01_fastqc.html
[2021-05-13 06:45:24,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n02_N1_01_fastqc.html
[2021-05-13 06:45:24,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n01_N1_03_fastqc.html
[2021-05-13 06:45:24,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n01_N1_03_fastqc.html
[2021-05-13 06:45:24,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n01_WT03_fastqc.html
[2021-05-13 06:45:24,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n01_WT03_fastqc.html
[2021-05-13 06:45:24,643] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n01_N1_04_fastqc.html
[2021-05-13 06:45:24,644] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n01_N1_04_fastqc.html
[2021-05-13 06:45:24,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n01_WT02_fastqc.html
[2021-05-13 06:45:24,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n01_WT02_fastqc.html
[2021-05-13 06:45:24,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n02_undetermined_fastqc.html
[2021-05-13 06:45:24,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n02_undetermined_fastqc.html
[2021-05-13 06:45:24,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n02_WT04_fastqc.html
[2021-05-13 06:45:24,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n02_WT04_fastqc.html
[2021-05-13 06:45:24,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n02_N1_04_fastqc.html
[2021-05-13 06:45:24,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n02_N1_04_fastqc.html
[2021-05-13 06:45:24,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n01_WT01_fastqc.html
[2021-05-13 06:45:24,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n01_WT01_fastqc.html
[2021-05-13 06:45:24,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n02_WT03_fastqc.html
[2021-05-13 06:45:24,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n02_WT03_fastqc.html
[2021-05-13 06:45:24,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n02_N1_02_fastqc.html
[2021-05-13 06:45:24,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n02_N1_02_fastqc.html
[2021-05-13 06:45:24,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n02_WT01_fastqc.html
[2021-05-13 06:45:24,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n02_WT01_fastqc.html
[2021-05-13 06:45:25,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n01_undetermined_fastqc.html
[2021-05-13 06:45:25,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n01_undetermined_fastqc.html
[2021-05-13 06:45:25,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n01_N1_01_fastqc.html
[2021-05-13 06:45:25,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n01_N1_01_fastqc.html
[2021-05-13 06:45:25,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n02_WT02_fastqc.html
[2021-05-13 06:45:25,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n02_WT02_fastqc.html
[2021-05-13 06:45:25,162] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n02_N1_03_fastqc.html
[2021-05-13 06:45:25,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n02_N1_03_fastqc.html
[2021-05-13 06:45:25,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTGM5AFX2_n01_WT04_fastqc.html
[2021-05-13 06:45:25,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTGM5AFX2_n01_WT04_fastqc.html
[2021-05-13 06:45:25,564] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2021-05-13 06:45:25,565] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2021-05-13 06:45:25,574] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2021-05-13 06:45:25,584] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2021-05-13 06:45:25,589] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 9 samples (table)
[2021-05-13 06:45:25,594] multiqc [DEBUG ] No samples found: conpair
[2021-05-13 06:45:25,599] multiqc [DEBUG ] No samples found: peddy
[2021-05-13 06:45:25,605] multiqc [DEBUG ] No samples found: somalier
[2021-05-13 06:45:25,610] multiqc [DEBUG ] No samples found: methylQA
[2021-05-13 06:45:25,618] multiqc [DEBUG ] No samples found: mosdepth
[2021-05-13 06:45:25,622] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2021-05-13 06:45:25,626] multiqc [DEBUG ] No samples found: qualimap
[2021-05-13 06:45:25,632] multiqc [DEBUG ] No samples found: preseq
[2021-05-13 06:45:25,636] multiqc [DEBUG ] No samples found: quast
[2021-05-13 06:45:25,641] multiqc [DEBUG ] No samples found: qorts
[2021-05-13 06:45:25,646] multiqc [DEBUG ] No samples found: rna_seqc
[2021-05-13 06:45:25,651] multiqc [DEBUG ] No samples found: rockhopper
[2021-05-13 06:45:25,656] multiqc [DEBUG ] No samples found: rsem
[2021-05-13 06:45:25,665] multiqc [DEBUG ] No samples found: rseqc
[2021-05-13 06:45:25,669] multiqc [DEBUG ] No samples found: busco
[2021-05-13 06:45:25,674] multiqc [DEBUG ] No samples found: goleft_indexcov
[2021-05-13 06:45:25,679] multiqc [DEBUG ] No samples found: disambiguate
[2021-05-13 06:45:25,684] multiqc [DEBUG ] No samples found: supernova
[2021-05-13 06:45:25,696] multiqc [DEBUG ] No samples found: deeptools
[2021-05-13 06:45:25,701] multiqc [DEBUG ] No samples found: sargasso
[2021-05-13 06:45:25,705] multiqc [DEBUG ] No samples found: verifybamid
[2021-05-13 06:45:25,711] multiqc [DEBUG ] No samples found: mirtrace
[2021-05-13 06:45:25,716] multiqc [DEBUG ] No samples found: happy
[2021-05-13 06:45:25,720] multiqc [DEBUG ] No samples found: mirtop
[2021-05-13 06:45:25,727] multiqc [DEBUG ] No samples found: homer
[2021-05-13 06:45:25,734] multiqc [DEBUG ] No samples found: macs2
[2021-05-13 06:45:25,738] multiqc [DEBUG ] No samples found: theta2
[2021-05-13 06:45:25,743] multiqc [DEBUG ] No samples found: snpeff
[2021-05-13 06:45:25,752] multiqc [DEBUG ] No samples found: gatk
[2021-05-13 06:45:25,756] multiqc [DEBUG ] No samples found: htseq
[2021-05-13 06:45:25,762] multiqc [DEBUG ] No samples found: bcftools
[2021-05-13 06:45:25,767] multiqc [DEBUG ] No samples found: featureCounts
[2021-05-13 06:45:25,773] multiqc [DEBUG ] No samples found: fgbio
[2021-05-13 06:45:25,786] multiqc [DEBUG ] No samples found: dragen
[2021-05-13 06:45:25,790] multiqc [DEBUG ] No samples found: dedup
[2021-05-13 06:45:25,795] multiqc [DEBUG ] No samples found: damageprofiler
[2021-05-13 06:45:25,817] multiqc [DEBUG ] No samples found: biobambam2
[2021-05-13 06:45:25,822] multiqc [DEBUG ] No samples found: mtnucratio
[2021-05-13 06:45:25,824] multiqc [DEBUG ] No samples found: picard
[2021-05-13 06:45:25,829] multiqc [DEBUG ] No samples found: prokka
[2021-05-13 06:45:25,833] multiqc [DEBUG ] No samples found: samblaster
[2021-05-13 06:45:25,841] multiqc [DEBUG ] No samples found: samtools
[2021-05-13 06:45:25,846] multiqc [DEBUG ] No samples found: sexdeterrmine
[2021-05-13 06:45:25,851] multiqc [DEBUG ] No samples found: bamtools
[2021-05-13 06:45:25,855] multiqc [DEBUG ] No samples found: jellyfish
[2021-05-13 06:45:25,862] multiqc [DEBUG ] No samples found: vcftools
[2021-05-13 06:45:25,867] multiqc [DEBUG ] No samples found: longranger
[2021-05-13 06:45:25,872] multiqc [DEBUG ] No samples found: stacks
[2021-05-13 06:45:25,876] multiqc [DEBUG ] No samples found: varscan2
[2021-05-13 06:45:25,888] multiqc [DEBUG ] No samples found: bbmap
[2021-05-13 06:45:25,893] multiqc [DEBUG ] No samples found: bismark
[2021-05-13 06:45:25,898] multiqc [DEBUG ] No samples found: biscuit
[2021-05-13 06:45:25,903] multiqc [DEBUG ] No samples found: hicexplorer
[2021-05-13 06:45:25,908] multiqc [DEBUG ] No samples found: hicup
[2021-05-13 06:45:25,913] multiqc [DEBUG ] No samples found: hicpro
[2021-05-13 06:45:25,918] multiqc [DEBUG ] No samples found: salmon
[2021-05-13 06:45:25,923] multiqc [DEBUG ] No samples found: kallisto
[2021-05-13 06:45:25,928] multiqc [DEBUG ] No samples found: slamdunk
[2021-05-13 06:45:25,932] multiqc [DEBUG ] No samples found: star
[2021-05-13 06:45:25,937] multiqc [DEBUG ] No samples found: hisat2
[2021-05-13 06:45:25,941] multiqc [DEBUG ] No samples found: tophat
[2021-05-13 06:45:25,946] multiqc [DEBUG ] No samples found: bowtie2
[2021-05-13 06:45:25,950] multiqc [DEBUG ] No samples found: bowtie1
[2021-05-13 06:45:25,955] multiqc [DEBUG ] No samples found: snpsplit
[2021-05-13 06:45:25,961] multiqc [DEBUG ] No samples found: kat
[2021-05-13 06:45:25,967] multiqc [DEBUG ] No samples found: leehom
[2021-05-13 06:45:25,972] multiqc [DEBUG ] No samples found: adapterRemoval
[2021-05-13 06:45:25,977] multiqc [DEBUG ] No samples found: clipandmerge
[2021-05-13 06:45:25,982] multiqc [DEBUG ] No samples found: cutadapt
[2021-05-13 06:45:25,987] multiqc [DEBUG ] No samples found: flexbar
[2021-05-13 06:45:25,991] multiqc [DEBUG ] No samples found: kaiju
[2021-05-13 06:45:25,996] multiqc [DEBUG ] No samples found: kraken
[2021-05-13 06:45:26,002] multiqc [DEBUG ] No samples found: malt
[2021-05-13 06:45:26,006] multiqc [DEBUG ] No samples found: trimmomatic
[2021-05-13 06:45:26,012] multiqc [DEBUG ] No samples found: sickle
[2021-05-13 06:45:26,016] multiqc [DEBUG ] No samples found: skewer
[2021-05-13 06:45:26,021] multiqc [DEBUG ] No samples found: sortmerna
[2021-05-13 06:45:26,025] multiqc [DEBUG ] No samples found: biobloomtools
[2021-05-13 06:45:26,031] multiqc [DEBUG ] No samples found: fastq_screen
[2021-05-13 06:45:26,035] multiqc [DEBUG ] No samples found: afterqc
[2021-05-13 06:45:26,040] multiqc [DEBUG ] No samples found: fastp
[2021-05-13 06:45:26,505] multiqc.modules.fastqc.fastqc [INFO ] Found 18 reports
[2021-05-13 06:45:26,869] multiqc [DEBUG ] No samples found: pycoqc
[2021-05-13 06:45:26,873] multiqc [DEBUG ] No samples found: minionqc
[2021-05-13 06:45:26,878] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2021-05-13 06:45:26,883] multiqc [DEBUG ] No samples found: clusterflow
[2021-05-13 06:45:26,888] multiqc [DEBUG ] No samples found: bcl2fastq
[2021-05-13 06:45:26,893] multiqc [DEBUG ] No samples found: interop
[2021-05-13 06:45:26,897] multiqc [DEBUG ] No samples found: ivar
[2021-05-13 06:45:26,904] multiqc [DEBUG ] No samples found: flash
[2021-05-13 06:45:26,908] multiqc [DEBUG ] No samples found: seqyclean
[2021-05-13 06:45:26,908] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'.
[2021-05-13 06:45:26,908] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2021-05-13 06:45:26,908] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'.
[2021-05-13 06:45:26,908] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2021-05-13 06:45:26,930] multiqc [INFO ] Compressing plot data
[2021-05-13 06:45:27,232] multiqc [INFO ] Report : multiqc_report.html
[2021-05-13 06:45:27,232] multiqc [INFO ] Data : multiqc_data
[2021-05-13 06:45:27,232] multiqc [DEBUG ] Moving data file from '/state/partition1/job-6775508/tmpjypb5lq4/multiqc_data' to '/scratch/gencore/logs/html/HTGM5AFX2/merged/multiqc_data'
[2021-05-13 06:45:27,401] multiqc [INFO ] MultiQC complete