HTFH5AFXY_n02_ncm4-11.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HTFH5AFXY_n02_ncm4-11.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11668245
Sequences flagged as poor quality	0
Sequence length	76
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	370640	3.1764845527326515	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	95810	0.8211174859629704	No Hit
AAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGC	14031	0.12024944625348544	Illumina Single End PCR Primer 1 (100% over 49bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGAGCAC	7565	43.445915	15
CCCCGTA	5655	43.139378	47
GTCCCCG	5150	42.81609	45
GAGCACA	7005	42.620663	16
GGTCCCC	5770	41.732037	44
GTGACTG	5315	40.673534	1
TGGTCCC	6020	40.57827	43
AGATAGA	18980	39.81399	7
GTGGTCC	5975	39.770824	42
GACCGAC	2030	38.965023	10
TCCCCGT	5485	38.797222	46
TGACTGG	5940	37.79902	2
GATCGAG	3880	37.345203	8
GACTGGA	6660	37.27686	3
GATAGAT	18315	36.843964	8
AAAGGGG	82895	35.885395	67
GACCCCG	1380	35.507706	45
AAGGGGG	84935	35.257896	68
ACCGACG	2455	34.785854	11
CAGATAG	7345	34.59734	6