FastQCFastQC Report
Sat 28 Sep 2019
HTFH3AFXY_n01_ds1351-50.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTFH3AFXY_n01_ds1351-50.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11667944
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG23350.014.693291
GCACACG13453.092282E-117.025904711
ACACGTC16453.8344297E-95.744584613
CACACGT18551.9845174E-95.471606312
TGGGGGG24801.8189894E-125.36428451
ACGTCTG18901.7673301E-85.18509815
Produced by FastQC (version 0.11.5)