[2022-05-27 03:28:02,491] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-05-27 03:28:02,491] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-05-27 03:28:02,491] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-05-27 03:28:02,492] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-05-27 03:28:02,492] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-05-27 03:28:02,492] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HTFFKBGXL/merged [2022-05-27 03:28:03,105] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-05-27 03:28:03,105] multiqc [INFO ] This is MultiQC v1.9 [2022-05-27 03:28:03,105] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HTFFKBGXL/merged [2022-05-27 03:28:03,105] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HTFFKBGXL/merged [2022-05-27 03:28:03,106] multiqc [INFO ] Template : default [2022-05-27 03:28:03,106] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-05-27 03:28:03,106] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HTFFKBGXL/merged [2022-05-27 03:28:03,106] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-05-27 03:28:03,106] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-20199344/tmpljix1yg5 [2022-05-27 03:28:03,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0149_N_fastqc.html [2022-05-27 03:28:03,225] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded 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HTFFKBGXL_n02_HRB0027_fastqc.html [2022-05-27 03:28:08,918] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0212_N_fastqc.html [2022-05-27 03:28:08,920] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0212_N_fastqc.html [2022-05-27 03:28:08,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0158_N_fastqc.html [2022-05-27 03:28:08,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0158_N_fastqc.html [2022-05-27 03:28:09,002] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0031_fastqc.html [2022-05-27 03:28:09,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0031_fastqc.html [2022-05-27 03:28:09,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB08EB_fastqc.html [2022-05-27 03:28:09,047] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB08EB_fastqc.html [2022-05-27 03:28:09,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0147_fastqc.html [2022-05-27 03:28:09,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0147_fastqc.html [2022-05-27 03:28:09,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0242_fastqc.html [2022-05-27 03:28:09,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0242_fastqc.html [2022-05-27 03:28:09,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0014_fastqc.html [2022-05-27 03:28:09,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0014_fastqc.html [2022-05-27 03:28:09,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB06LB_N_fastqc.html [2022-05-27 03:28:09,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB06LB_N_fastqc.html [2022-05-27 03:28:09,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0019_fastqc.html [2022-05-27 03:28:09,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0019_fastqc.html [2022-05-27 03:28:09,313] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0073_N_fastqc.html [2022-05-27 03:28:09,315] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0073_N_fastqc.html [2022-05-27 03:28:09,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0221_N_fastqc.html [2022-05-27 03:28:09,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0221_N_fastqc.html [2022-05-27 03:28:09,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0102_fastqc.html [2022-05-27 03:28:09,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0102_fastqc.html [2022-05-27 03:28:09,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0083_N_fastqc.html [2022-05-27 03:28:09,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0083_N_fastqc.html [2022-05-27 03:28:09,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB05EB_N_fastqc.html [2022-05-27 03:28:09,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB05EB_N_fastqc.html [2022-05-27 03:28:09,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0221_N_fastqc.html [2022-05-27 03:28:09,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0221_N_fastqc.html [2022-05-27 03:28:09,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0213_N_fastqc.html [2022-05-27 03:28:09,582] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0213_N_fastqc.html [2022-05-27 03:28:09,623] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0241_fastqc.html [2022-05-27 03:28:09,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0241_fastqc.html [2022-05-27 03:28:09,665] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0247_fastqc.html [2022-05-27 03:28:09,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0247_fastqc.html [2022-05-27 03:28:09,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0225_N_fastqc.html [2022-05-27 03:28:09,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0225_N_fastqc.html [2022-05-27 03:28:09,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB07LB_N_fastqc.html [2022-05-27 03:28:09,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB07LB_N_fastqc.html [2022-05-27 03:28:09,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0075_fastqc.html [2022-05-27 03:28:09,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0075_fastqc.html [2022-05-27 03:28:09,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0081_N_fastqc.html [2022-05-27 03:28:09,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0081_N_fastqc.html [2022-05-27 03:28:09,884] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB07EB_N_fastqc.html [2022-05-27 03:28:09,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB07EB_N_fastqc.html [2022-05-27 03:28:09,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0148_fastqc.html [2022-05-27 03:28:09,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0148_fastqc.html [2022-05-27 03:28:09,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0243_fastqc.html [2022-05-27 03:28:09,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0243_fastqc.html [2022-05-27 03:28:10,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0228_N_fastqc.html [2022-05-27 03:28:10,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0228_N_fastqc.html [2022-05-27 03:28:10,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0020_fastqc.html [2022-05-27 03:28:10,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0020_fastqc.html [2022-05-27 03:28:10,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0225_N_fastqc.html [2022-05-27 03:28:10,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0225_N_fastqc.html [2022-05-27 03:28:10,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0237_N_fastqc.html [2022-05-27 03:28:10,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0237_N_fastqc.html [2022-05-27 03:28:10,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0146_fastqc.html [2022-05-27 03:28:10,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0146_fastqc.html [2022-05-27 03:28:10,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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HTFFKBGXL_n01_HRB0100_fastqc.html [2022-05-27 03:28:10,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0100_fastqc.html [2022-05-27 03:28:10,392] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0213_N_fastqc.html [2022-05-27 03:28:10,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0213_N_fastqc.html [2022-05-27 03:28:10,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB06EB_N_fastqc.html [2022-05-27 03:28:10,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB06EB_N_fastqc.html [2022-05-27 03:28:10,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0246_fastqc.html [2022-05-27 03:28:10,481] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0246_fastqc.html [2022-05-27 03:28:10,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0087_fastqc.html [2022-05-27 03:28:10,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0087_fastqc.html [2022-05-27 03:28:10,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0151_N_fastqc.html [2022-05-27 03:28:10,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0151_N_fastqc.html [2022-05-27 03:28:10,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0222_N_fastqc.html [2022-05-27 03:28:10,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB0222_N_fastqc.html [2022-05-27 03:28:10,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0227_N_fastqc.html [2022-05-27 03:28:10,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0227_N_fastqc.html [2022-05-27 03:28:10,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB11LB_fastqc.html [2022-05-27 03:28:10,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n02_HRB11LB_fastqc.html [2022-05-27 03:28:10,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB08EB_fastqc.html [2022-05-27 03:28:10,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB08EB_fastqc.html [2022-05-27 03:28:10,784] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0017_fastqc.html [2022-05-27 03:28:10,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HTFFKBGXL_n01_HRB0017_fastqc.html [2022-05-27 03:28:11,286] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-05-27 03:28:11,288] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-05-27 03:28:11,335] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 85 samples (table) [2022-05-27 03:28:11,337] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-05-27 03:28:11,349] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2022-05-27 03:28:11,355] multiqc [DEBUG ] No samples found: conpair [2022-05-27 03:28:11,361] multiqc [DEBUG ] No samples found: peddy [2022-05-27 03:28:11,368] multiqc [DEBUG ] No samples found: somalier [2022-05-27 03:28:11,375] multiqc [DEBUG ] No samples found: methylQA [2022-05-27 03:28:11,389] multiqc [DEBUG ] No samples found: mosdepth [2022-05-27 03:28:11,396] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-05-27 03:28:11,399] multiqc [DEBUG ] No samples found: qualimap [2022-05-27 03:28:11,405] multiqc [DEBUG ] No samples found: preseq [2022-05-27 03:28:11,412] multiqc [DEBUG ] No samples found: quast [2022-05-27 03:28:11,420] multiqc [DEBUG ] No samples found: qorts [2022-05-27 03:28:11,428] multiqc [DEBUG ] No samples found: rna_seqc [2022-05-27 03:28:11,435] multiqc [DEBUG ] No samples found: rockhopper [2022-05-27 03:28:11,442] multiqc [DEBUG ] No samples found: rsem [2022-05-27 03:28:11,463] multiqc [DEBUG ] No samples found: rseqc [2022-05-27 03:28:11,469] multiqc [DEBUG ] No samples found: busco [2022-05-27 03:28:11,476] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-05-27 03:28:11,484] multiqc [DEBUG ] No samples found: disambiguate [2022-05-27 03:28:11,490] multiqc [DEBUG ] No samples found: supernova [2022-05-27 03:28:11,509] multiqc [DEBUG ] No samples found: deeptools [2022-05-27 03:28:11,516] multiqc [DEBUG ] No samples found: sargasso [2022-05-27 03:28:11,524] multiqc [DEBUG ] No samples found: verifybamid [2022-05-27 03:28:11,530] multiqc [DEBUG ] No samples found: mirtrace [2022-05-27 03:28:11,537] multiqc [DEBUG ] No samples found: happy [2022-05-27 03:28:11,544] multiqc [DEBUG ] No samples found: mirtop [2022-05-27 03:28:11,555] multiqc [DEBUG ] No samples found: homer [2022-05-27 03:28:11,561] multiqc [DEBUG ] No samples found: macs2 [2022-05-27 03:28:11,567] multiqc [DEBUG ] No samples found: theta2 [2022-05-27 03:28:11,578] multiqc [DEBUG ] No samples found: snpeff [2022-05-27 03:28:11,590] multiqc [DEBUG ] No samples found: gatk [2022-05-27 03:28:11,596] multiqc [DEBUG ] No samples found: htseq [2022-05-27 03:28:11,604] multiqc [DEBUG ] No samples found: bcftools [2022-05-27 03:28:11,609] multiqc [DEBUG ] No samples found: featureCounts [2022-05-27 03:28:11,619] multiqc [DEBUG ] No samples found: fgbio [2022-05-27 03:28:11,642] multiqc [DEBUG ] No samples found: dragen [2022-05-27 03:28:11,649] multiqc [DEBUG ] No samples found: dedup [2022-05-27 03:28:11,656] multiqc [DEBUG ] No samples found: damageprofiler [2022-05-27 03:28:11,694] multiqc [DEBUG ] No samples found: biobambam2 [2022-05-27 03:28:11,700] multiqc [DEBUG ] No samples found: mtnucratio [2022-05-27 03:28:11,702] multiqc [DEBUG ] No samples found: picard [2022-05-27 03:28:11,708] multiqc [DEBUG ] No samples found: prokka [2022-05-27 03:28:11,713] multiqc [DEBUG ] No samples found: samblaster [2022-05-27 03:28:11,725] multiqc [DEBUG ] No samples found: samtools [2022-05-27 03:28:11,731] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-05-27 03:28:11,739] multiqc [DEBUG ] No samples found: bamtools [2022-05-27 03:28:11,745] multiqc [DEBUG ] No samples found: jellyfish [2022-05-27 03:28:11,756] multiqc [DEBUG ] No samples found: vcftools [2022-05-27 03:28:11,763] multiqc [DEBUG ] No samples found: longranger [2022-05-27 03:28:11,769] multiqc [DEBUG ] No samples found: stacks [2022-05-27 03:28:11,777] multiqc [DEBUG ] No samples found: varscan2 [2022-05-27 03:28:11,801] multiqc [DEBUG ] No samples found: bbmap [2022-05-27 03:28:11,807] multiqc [DEBUG ] No samples found: bismark [2022-05-27 03:28:11,815] multiqc [DEBUG ] No samples found: biscuit [2022-05-27 03:28:11,822] multiqc [DEBUG ] No samples found: hicexplorer [2022-05-27 03:28:11,828] multiqc [DEBUG ] No samples found: hicup [2022-05-27 03:28:11,834] multiqc [DEBUG ] No samples found: hicpro [2022-05-27 03:28:11,840] multiqc [DEBUG ] No samples found: salmon [2022-05-27 03:28:11,846] multiqc [DEBUG ] No samples found: kallisto [2022-05-27 03:28:11,851] multiqc [DEBUG ] No samples found: slamdunk [2022-05-27 03:28:11,857] multiqc [DEBUG ] No samples found: star [2022-05-27 03:28:11,864] multiqc [DEBUG ] No samples found: hisat2 [2022-05-27 03:28:11,870] multiqc [DEBUG ] No samples found: tophat [2022-05-27 03:28:11,875] multiqc [DEBUG ] No samples found: bowtie2 [2022-05-27 03:28:11,883] multiqc [DEBUG ] No samples found: bowtie1 [2022-05-27 03:28:11,889] multiqc [DEBUG ] No samples found: snpsplit [2022-05-27 03:28:11,894] multiqc [DEBUG ] No samples found: kat [2022-05-27 03:28:11,903] multiqc [DEBUG ] No samples found: leehom [2022-05-27 03:28:11,909] multiqc [DEBUG ] No samples found: adapterRemoval [2022-05-27 03:28:11,914] multiqc [DEBUG ] No samples found: clipandmerge [2022-05-27 03:28:11,921] multiqc [DEBUG ] No samples found: cutadapt [2022-05-27 03:28:11,927] multiqc [DEBUG ] No samples found: flexbar [2022-05-27 03:28:11,933] multiqc [DEBUG ] No samples found: kaiju [2022-05-27 03:28:11,939] multiqc [DEBUG ] No samples found: kraken [2022-05-27 03:28:11,948] multiqc [DEBUG ] No samples found: malt [2022-05-27 03:28:11,953] multiqc [DEBUG ] No samples found: trimmomatic [2022-05-27 03:28:11,959] multiqc [DEBUG ] No samples found: sickle [2022-05-27 03:28:11,965] multiqc [DEBUG ] No samples found: skewer [2022-05-27 03:28:11,970] multiqc [DEBUG ] No samples found: sortmerna [2022-05-27 03:28:11,975] multiqc [DEBUG ] No samples found: biobloomtools [2022-05-27 03:28:11,982] multiqc [DEBUG ] No samples found: fastq_screen [2022-05-27 03:28:11,988] multiqc [DEBUG ] No samples found: afterqc [2022-05-27 03:28:11,994] multiqc [DEBUG ] No samples found: fastp [2022-05-27 03:28:22,047] multiqc.modules.fastqc.fastqc [INFO ] Found 170 reports [2022-05-27 03:28:41,999] multiqc [DEBUG ] No samples found: pycoqc [2022-05-27 03:28:42,007] multiqc [DEBUG ] No samples found: minionqc [2022-05-27 03:28:42,018] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-05-27 03:28:42,024] multiqc [DEBUG ] No samples found: clusterflow [2022-05-27 03:28:42,030] multiqc [DEBUG ] No samples found: bcl2fastq [2022-05-27 03:28:42,036] multiqc [DEBUG ] No samples found: interop [2022-05-27 03:28:42,043] multiqc [DEBUG ] No samples found: ivar [2022-05-27 03:28:42,049] multiqc [DEBUG ] No samples found: flash [2022-05-27 03:28:42,056] multiqc [DEBUG ] No samples found: seqyclean [2022-05-27 03:28:42,056] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2022-05-27 03:28:42,056] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-05-27 03:28:42,056] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2022-05-27 03:28:42,056] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-05-27 03:28:42,257] multiqc [INFO ] Compressing plot data [2022-05-27 03:28:42,318] multiqc [INFO ] Report : multiqc_report.html [2022-05-27 03:28:42,318] multiqc [INFO ] Data : multiqc_data [2022-05-27 03:28:42,319] multiqc [DEBUG ] Moving data file from '/state/partition1/job-20199344/tmpljix1yg5/multiqc_data' to '/scratch/gencore/logs/html/HTFFKBGXL/merged/multiqc_data' [2022-05-27 03:28:42,468] multiqc [INFO ] MultiQC complete