FastQCFastQC Report
Thu 2 Jun 2022
HTCK2BGXL_n01_RA11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTCK2BGXL_n01_RA11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12828780
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCGTCGCAGAATTCACT615260.4795935389023742No Hit
CCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCGTCGCAGAATTCAC535580.41748319013967033No Hit
GCGATTTCACGTTCTCTTGAACTCTCTCTTCAAAGTCCTTTGCAACTTTC520040.40536980133730566No Hit
CTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTT387470.30203183778971965No Hit
CTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCA370520.2888193577253644No Hit
GCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACC352070.2744376316376148No Hit
GTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAA346850.27036865547620276No Hit
CGAAGATTCGCCAACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAA219280.17092817867326432No Hit
CCGAAGTCCTGTTTCATTATTCCATGATGAGCTATTCAAGCAAGCGCTTG171970.1340501590954089No Hit
CTCACACTTACTAGGCATTCCTCGTTTAAGGGCAATAATTACAATACCCT141620.1103924145553981No Hit
CTGAGATCCAGCTATCCTGAGGGAAACTTCGGAAGGAACCAGCTACTAGA139570.1087944449900926No Hit
GTTTGTCCCTCTTAACCATTAAATCAGTTCTAGAACCAACAAAAAGAACC137930.10751606933784817No Hit
CCGGTTTGTCCCTCTTAACCATTAAATCAGTTCTAGAACCAACAAAAAGA137480.1071652955308299No Hit
CTTGCCCTCTCCTTGCTACTCGAAGAATCATTTGTATTCAACTCATTGAA137190.10693924129964033No Hit
GGAAGCTCCAGCCGAGCCTACGCTCATAGCCTTCAACGCAACCGCCACGA136920.10672877701542938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)