FastQCFastQC Report
Thu 2 Jun 2022
HTCK2BGXL_n01_RA09.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTCK2BGXL_n01_RA09.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14707106
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCGTCGCAGAATTCAC270600.1839926903362225No Hit
CGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCGTCGCAGAATTCACT256050.17409951352767838No Hit
GCGATTTCACGTTCTCTTGAACTCTCTCTTCAAAGTCCTTTGCAACTTTC255660.17383433559260403No Hit
CTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCA222160.15105623091313816No Hit
CTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTT189160.12861809794530615No Hit
GTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAA176690.12013920345715874No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)