FastQCFastQC Report
Thu 30 Jun 2016
HTC23BCXX_l02n02_kb_plate7_10.3520000005fa6b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTC23BCXX_l02n02_kb_plate7_10.3520000005fa6b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2160
Sequences flagged as poor quality0
Sequence length33
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCAGAGACGTACGTACTCTGCGTTGATACCA663.0555555555555554No Hit
CGTACGTACTCAAAAAAAAAAAAAAAAAAAAAA431.990740740740741No Hit
GACGTACGTACTCAAAAAAAAAAAAAAAAAAAA190.8796296296296297No Hit
GCAGAGACGTACGTACTCTGCGTTGATACCACT170.787037037037037No Hit
GAGACGTACGTACTCAAAAAAAAAAAAAAAAAA140.6481481481481481No Hit
GAGTGAATGGGGAGACGTACGTACTCAAAAAAA130.6018518518518519No Hit
GTGAATGGGGAGACGTACGTACTCAAAAAAAAA130.6018518518518519No Hit
GTGAATGGGAGACGTACGTACTCAAAAAAAAAA110.5092592592592593No Hit
TACGTACTCAAAAAAAAAAAAAAAAAAAAAAAA100.4629629629629629No Hit
GTGAATGGGATGCAGAGACGAAAAAAAAAAAAA80.3703703703703704No Hit
ATGCAGAGACGTACAAAAAAAAAAAAAAAAAAA80.3703703703703704No Hit
ATGCAGAGACAAAAAAAAAAAAAAAAAAAAAAA60.2777777777777778No Hit
GTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAA60.2777777777777778No Hit
TATCAACGCAGAGTGAATGGGGAGACGTACGTA60.2777777777777778No Hit
GTGAATGGGATGCAGAGAAAAAAAAAAAAAAAA60.2777777777777778No Hit
GTGAATGGGAGAGACGTACGTACTCAAAAAAAA60.2777777777777778No Hit
GTGAATGGGCATGCAGAGACAAAAAAAAAAAAA60.2777777777777778No Hit
GCAGAGACGTACAAAAAAAAAAAAAAAAAAAAA50.23148148148148145No Hit
ACGCAGAGTGAATGGGATGCAGAGAAAAAAAAA50.23148148148148145No Hit
ATCAACGCAGAGTGAATGGGGAGACGTACGTAC50.23148148148148145No Hit
GAGTGAATGGGATGCAGAGACAAAAAAAAAAAA50.23148148148148145No Hit
ACGCAGAGTGAATGGGGAGACGTACGTACTCAA50.23148148148148145No Hit
GGAGAGACGTACGTACTCAAAAAAAAAAAAAAA50.23148148148148145No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA50.23148148148148145No Hit
GTGAATGGGGAGAGACGTACGTACTCAAAAAAA40.1851851851851852No Hit
ACGCAGAGTGAATGGGATGCAGAGACGAAAAAA40.1851851851851852No Hit
GACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.1851851851851852No Hit
GAGTGAATGGGATGCAGAAAAAAAAAAAAAAAA40.1851851851851852No Hit
ATGCAGAGACGTACGAAAAAAAAAAAAAAAAAA40.1851851851851852No Hit
GTGAATGGGAATGCAGAGACAAAAAAAAAAAAA40.1851851851851852No Hit
AACGCAGAGTGAATGGGGAGACGTACGTACTCA40.1851851851851852No Hit
TATCAACGCAGAGTGAATGGGATGCAGAGACGT40.1851851851851852No Hit
ATGCAGAGACGAAAAAAAAAAAAAAAAAAAAAA40.1851851851851852No Hit
GAGTGAATGGGATGCAGAGACGAAAAAAAAAAA40.1851851851851852No Hit
CGTACGAACTCAAAAAAAAAAAAAAAAAAAAAA40.1851851851851852No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.1851851851851852No Hit
GAATGGGGAGACGTACGTACTCAAAAAAAAAAA40.1851851851851852No Hit
GTATCAACGCAGAGTGAATGGGGAGACGTACGT40.1851851851851852No Hit
TATCAACGCAGAGTGAATGGGATGCAGAGAAAA40.1851851851851852No Hit
GTGAATGGGGATGCAGAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
GTGAATGGGGATGCAGAGACAAAAAAAAAAAAA30.1388888888888889No Hit
TATCAACGCAGAGTGAATGGGAAGCAGTGGTAT30.1388888888888889No Hit
ACGCAGAGTGAATGGGATGCAGAGACGTACGTA30.1388888888888889No Hit
ATGCAGAGACGTACGTAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
ATGCAGAGAAAAAAAAAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
ACGCAGAGTGAATGGGCATGCAGAGACAAAAAA30.1388888888888889No Hit
ATCAACGCAGAGTGAATGGGATGCAGAGACGTA30.1388888888888889No Hit
TATCAACGCAGAGTGAATGGGAGAGACGTACGT30.1388888888888889No Hit
GGGATGCAGAGACAAAAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
GCAGAGACGTACGAAAAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
ACGCAGAGTGAATGGGGATGCAGAAAAAAAAAA30.1388888888888889No Hit
GTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
ACGCAGAGTGAATGGGAATGCAGAGACAAAAAA30.1388888888888889No Hit
GATGCAGAGAAAAAAAAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
GATATATGCAGAGACAAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
CGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
TATCAACGCAGAGTGAATGGGAGACGTACGTAC30.1388888888888889No Hit
ACGCAGAGTGAATGGGAGACGTACGTACTCAAA30.1388888888888889No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.1388888888888889No Hit
CCCCCCATGCAGAGACGTACGTACTCTGCGTTG30.1388888888888889No Hit
GAATGGGAGACGTACGTACTCAAAAAAAAAAAA30.1388888888888889No Hit
CGTACGTACTCTAAAAAAAAAAAAAAAAAAAAA30.1388888888888889No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers