FastQCFastQC Report
Thu 30 Jun 2016
HTC23BCXX_l02n02_kb_plate4_52.3520000005dba4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHTC23BCXX_l02n02_kb_plate4_52.3520000005dba4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2940
Sequences flagged as poor quality0
Sequence length33
%GC34

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCGACGTCTACGTACTCTGCGTTGATACCA652.2108843537414966No Hit
GTATCGACGTCAAAAAAAAAAAAAAAAAAAAAA130.44217687074829937No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA130.44217687074829937No Hit
GTGAATGGGTATCGACGAAAAAAAAAAAAAAAA90.30612244897959184No Hit
GTGAATGGGTATCGACGTCAAAAAAAAAAAAAA90.30612244897959184No Hit
GTGAATGGGGTATCGACGTCAAAAAAAAAAAAA70.2380952380952381No Hit
GTGAATGGGTATCGAAAAAAAAAAAAAAAAAAA60.20408163265306123No Hit
GAGTGAATGGGTATCGACGTAAAAAAAAAAAAA60.20408163265306123No Hit
TATCAACGCAGAGTGAATGGGTATCGACGAAAA60.20408163265306123No Hit
TTCGTGCACAGTTCATAAATAAATAAAAATGTA60.20408163265306123No Hit
CAGTATCGACGTCTACGTACTCTGCGTTGATAC50.17006802721088435No Hit
ACGCAGAGTGAATGGGTATCGAAAAAAAAAAAA50.17006802721088435No Hit
GAGTGAATGGGTATCGAAAAAAAAAAAAAAAAA50.17006802721088435No Hit
GTTCATAAATAAATAAAAATGTATACAATGTTT40.13605442176870747No Hit
ACGCAGAGTGAATGGGTATCGACGAAAAAAAAA40.13605442176870747No Hit
ACCTATACCTTGTTGTGTGTTGTTACTAATGTT40.13605442176870747No Hit
GTATAACATCTTGGCAGAGGTAGAACTTGTAGT40.13605442176870747No Hit
GAATAAAAATGTCTCGTGTTTTCTCAAAAAAAA40.13605442176870747No Hit
CCCCTGTATCGACGTCTACGTACTCTGCGTTGA40.13605442176870747No Hit
GTATGTATTTCATCTTTTTAAAACTACCTATAC30.10204081632653061No Hit
GGTATCGACGTCTACGTACTCTGCGTTGATACC30.10204081632653061No Hit
ATGTATCGACGTCTACGTACTCTGCGTTGATAC30.10204081632653061No Hit
GTGAATGGGTATCGACAAAAAAAAAAAAAAAAA30.10204081632653061No Hit
GCGTATCGACGTCTACGTACTCTGCGTTGATAC30.10204081632653061No Hit
TATCAACGCAGAGTGAATGGGTATCGACGTCTA30.10204081632653061No Hit
GAGTGAATGGGTATCGACGAAAAAAAAAAAAAA30.10204081632653061No Hit
GTTTTGTATATGATGTTAATAATGTTGTAATAA30.10204081632653061No Hit
GTGAATGGGAGTATCGACGTCAAAAAAAAAAAA30.10204081632653061No Hit
TATTATATGTGATTGGCTTTAATAAAAGTGGGT30.10204081632653061No Hit
GAGTGAATGGGTATCGACGTCAAAAAAAAAAAA30.10204081632653061No Hit
ACGCAGAGTGAATGGGTATCGACAAAAAAAAAA30.10204081632653061No Hit
TATCAACGCAGAGTGAATGGGTATCGACGTAAA30.10204081632653061No Hit
GTGAATGGGTATCGACGTCTACAAAAAAAAAAA30.10204081632653061No Hit
ACCTATACCCGGCCGTCGGGGCAAGAGCCAGGC30.10204081632653061No Hit
GTGTGAAGCCATCTCGTACTAAACGAAACAAAA30.10204081632653061No Hit
GTTGTGTGTTGTTACTAATGTTGTAATAATCGA30.10204081632653061No Hit
GAGTGAATGGGGGTGGTATCAAAAAAAAAAAAA30.10204081632653061No Hit
ATGTAACATTATGATATTTCCAATCTCTGGCTG30.10204081632653061No Hit
CATCAAAATAATACAAATATTTACTTGAAAAAA30.10204081632653061No Hit
TATCAACGCAGAGTGAATGGGTATCGACAAAAA30.10204081632653061No Hit
CTATACAAGTTCTCGGAACAGGTTTTAGAACAG30.10204081632653061No Hit
TCCTAATACAAAGTGAAGTGAAAGGAAAAAAAA30.10204081632653061No Hit
TAATAAAAGTGGGTGATTATTATAAAAAAAAAA30.10204081632653061No Hit
CTGTATCGACGTCTACGTACTCTGCGTTGATAC30.10204081632653061No Hit
GTGTATCGACGTCTACGTACTCTGCGTTGATAC30.10204081632653061No Hit
GTTCATAAATAAATAAAAATGTATTGTTCTTGT30.10204081632653061No Hit
CTTTAAGATAATGTCATCAAAATAATACAAATA30.10204081632653061No Hit
GTGAATGGGGTATCGACAAAAAAAAAAAAAAAA30.10204081632653061No Hit
GTATATTAATTTCTTAATTTTCGAATAAATCAC30.10204081632653061No Hit
TATCAACGCAGAGTGAATGGGTATCGACGTCAA30.10204081632653061No Hit
GTATACAATGTTTGTAAAAAAAAAAAAAAAAAA30.10204081632653061No Hit
GTATCAACGCAGAGTGAATGGGTATCGACGAAA30.10204081632653061No Hit
GTATCGACGTCTACAAAAAAAAAAAAAAAAAAA30.10204081632653061No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers