HT5VLAFXY_n02_wg_HALOCCA1_pGSTLHY1_Col_B_k-b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HT5VLAFXY_n02_wg_HALOCCA1_pGSTLHY1_Col_B_k-b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1134356
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	12093	1.066067442672318	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATC	2572	0.2267365800507072	Illumina Single End PCR Primer 1 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	405	54.443073	59
GGTCGCC	445	52.697628	56
GCCGTAT	425	51.057533	60
CCGTATC	405	48.393845	61
TGGTCGC	500	46.204945	55
CGTATCA	470	42.443867	62
GTGGTCG	555	42.25678	54
GTCGCCG	545	41.74207	57
TCGCCGT	530	41.602726	58
TCGGTGG	550	40.095203	51
CTCGGTG	525	38.004066	50
GGTGGTC	610	37.29908	53
CGGTGGT	610	35.00375	52
TCTCGGT	695	28.706844	49
GATCTCG	725	28.000528	47
ATCTCGG	730	27.808746	48
GTATCAT	845	23.607832	63
AGATCTC	915	22.18621	46
TCATTAA	1165	17.723312	66
TAGATCT	1230	17.357286	45