HT5VLAFXY_n01_wg_HALOLHY1_pGSTCCA1_Col_B

Basic Statistics

Measure	Value
Filename	HT5VLAFXY_n01_wg_HALOLHY1_pGSTCCA1_Col_B_k.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3632428
Sequences flagged as poor quality	0
Sequence length	76
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTAT	115425	3.1776266453182282	TruSeq Adapter, Index 27 (97% over 39bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	15790	0.4346954709081639	No Hit
CGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATGCC	12937	0.35615296435331956	TruSeq Adapter, Index 27 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTA	7869	0.2166319607711426	TruSeq Adapter, Index 27 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGAGCTCGTAT	5443	0.14984467689380215	TruSeq Adapter, Index 27 (97% over 39bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	16705	56.967594	50
TATGCCG	16815	56.927956	48
GCCGTCT	16415	56.886616	51
ATGCCGT	16740	56.869396	49
GTATGCC	17080	56.229134	47
CGTATGC	17215	55.869507	46
CCGTCTT	16860	55.468197	52
CTGCTTG	16370	54.66976	59
TCGTATG	17465	54.288216	45
CTCGTAT	16850	53.797863	44
CGTCTTC	17335	53.605064	53
CTTCTGC	17095	53.354427	56
TGCTTGA	17190	52.184063	60
GCTTGAA	17655	51.840496	61
TCTCGTA	16680	51.786224	43
TTCTGCT	17155	51.596855	57
TCTGCTT	17495	51.334324	58
GATCTCG	16980	50.335354	41
TCTTCTG	18390	49.844692	55
ATCTCGT	17275	49.59735	42