HT5VLAFXY_n01_wg_HALOCCA1_pGSTLHY1_Col_B

Basic Statistics

Measure	Value
Filename	HT5VLAFXY_n01_wg_HALOCCA1_pGSTLHY1_Col_B_k.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1134356
Sequences flagged as poor quality	0
Sequence length	76
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTAT	50679	4.467645077912049	TruSeq Adapter, Index 27 (97% over 39bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4672	0.4118636477437418	No Hit
CGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATGCC	4630	0.4081611063898811	TruSeq Adapter, Index 27 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTA	2942	0.2593542062632895	TruSeq Adapter, Index 27 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGAGCTCGTAT	2324	0.20487395491362498	TruSeq Adapter, Index 27 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATGTCGTAT	1270	0.11195779808102571	TruSeq Adapter, Index 27 (97% over 39bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCCGTCT	6990	58.483326	51
TGCCGTC	7205	58.1469	50
ATGCCGT	7215	58.017796	49
TATGCCG	7210	57.960945	48
GTATGCC	7310	57.311684	47
CCGTCTT	7145	57.16563	52
CGTATGC	7375	56.71165	46
CTGCTTG	6880	56.569553	59
CTTCTGC	7090	55.98004	56
CGTCTTC	7275	55.951683	53
TCGTATG	7430	55.726574	45
CTCGTAT	7030	55.711025	44
TGCTTGA	7020	55.441387	60
GCTTGAA	7195	55.211746	61
TTCTGCT	7030	54.765083	57
TCTCGTA	6950	54.237206	43
TCTGCTT	7185	54.21691	58
TCTTCTG	7455	53.56787	55
ATCTCGT	7100	52.351913	42
GATCTCG	7075	52.28956	41