HT5LJBCXY_l02n02_inf_cell70.35200000095840.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HT5LJBCXY_l02n02_inf_cell70.35200000095840.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	115746
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1678	1.4497261244449051	No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	231	0.19957493131512105	No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	229	0.19784700983187326	No Hit
CGTCTAGATCGGAAGAGCACACGTCTAGATCGGAAGAGCACACGTCTAGAT	150	0.12959411124358508	Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	146	0.1261382682770895	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTATA	20	7.001998E-4	45.00649	34
CAGGTAT	20	7.001998E-4	45.00649	33
ACGCATG	20	7.001998E-4	45.00649	40
ACACCCG	35	1.19795E-7	45.00649	19
AGGCCGA	20	7.001998E-4	45.00649	34
CCGAGTG	20	7.001998E-4	45.00649	40
GGTATAC	35	1.19795E-7	45.00649	35
TCGCGTG	20	7.001998E-4	45.00649	29
TCCTGTT	25	3.8657185E-5	45.006485	21
TGTGGAC	25	3.8657185E-5	45.006485	43
GTATACG	30	2.1464184E-6	45.006485	36
GGCTGTT	45	3.783498E-10	45.006485	45
ACGCTTG	25	3.8756087E-5	44.987038	11
TCCGTTC	130	0.0	41.54445	22
CGTTCTG	50	1.0622898E-9	40.505836	24
TCTCGTC	85	0.0	39.711605	27
ATCTCGG	40	3.4185177E-7	39.380676	26
TCTGGCC	75	0.0	39.00562	27
GGGAGCG	35	6.1935607E-6	38.57699	35
ATACGCG	35	6.1935607E-6	38.57699	38