HT5LJBCXY_l02n02_inf_cell55.35200000095678.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HT5LJBCXY_l02n02_inf_cell55.35200000095678.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	130165
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1842	1.4151269542503746	No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	257	0.1974417086006223	No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	254	0.19513694157415587	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	143	0.10986056159489879	No Hit
CGTCTAGATCGGAAGAGCACACGTCTAGATCGGAAGAGCACACGTCTAGAT	141	0.10832405024392118	Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGCTGC	20	6.9987256E-4	45.014988	44
AGGAGCA	20	7.011996E-4	44.9977	7
ACGCTCT	20	7.011996E-4	44.9977	11
GCTACGT	20	7.011996E-4	44.9977	8
TGTCCGG	20	7.011996E-4	44.9977	29
TCCGTTA	25	3.872877E-5	44.997696	32
TGATCTC	25	3.872877E-5	44.997696	24
CCGAGCT	35	6.207878E-6	38.569454	23
TGTGGAC	30	1.13214504E-4	37.512493	43
GTTCTGC	30	1.13471106E-4	37.498077	25
GGGCTAC	30	1.13471106E-4	37.498077	6
CTATCTC	30	1.13471106E-4	37.498077	24
CAGGGCG	30	1.13471106E-4	37.498077	33
GCCTAGG	30	1.13471106E-4	37.498077	1
GACGACG	30	1.13471106E-4	37.498077	39
ATCTCGT	105	0.0	36.426704	26
GATACGT	50	4.8245056E-8	35.998154	8
TCTCTCA	25	0.0021007934	35.998154	27
CGACGAG	25	0.0021007934	35.998154	38
GGCGTTT	25	0.0021007934	35.998154	10