HT5LJBCXY_l02n02_inf_cell33.352000000953a2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HT5LJBCXY_l02n02_inf_cell33.352000000953a2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	142216
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2064	1.4513134949654047	No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	291	0.2046183270518085	No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	245	0.17227316195083534	No Hit
CGTCTAGATCGGAAGAGCACACGTCTAGATCGGAAGAGCACACGTCTAGAT	190	0.13359959498228047	Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	158	0.11109861056421218	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGGAC	20	7.002169E-4	45.013367	41
GCCTCTG	25	3.866734E-5	45.013367	40
CTCTGTT	25	3.866734E-5	45.013367	42
TTTCGGA	30	2.1528704E-6	44.99754	1
TGTGATA	30	2.1528704E-6	44.99754	34
TAACATG	20	7.014319E-4	44.99754	29
GGGGTAC	20	7.014319E-4	44.99754	6
TCCAATC	20	7.014319E-4	44.99754	22
GGACACT	20	7.014319E-4	44.99754	7
GTTCTGC	25	3.8747792E-5	44.997536	25
TCTAGCC	25	3.8747792E-5	44.997536	27
GTAGACA	25	3.8747792E-5	44.997536	36
ACCCGTT	25	3.8747792E-5	44.997536	21
TCGAGGG	25	3.8747792E-5	44.997536	2
CTGTGAT	25	3.8747792E-5	44.997536	33
CTGGTAT	45	1.9088475E-8	39.99781	33
CTGGCCG	35	6.212089E-6	38.569317	28
CTTCCGT	160	0.0	37.966675	20
ATCTCCT	95	0.0	37.892666	26
ACACCCG	30	1.13526396E-4	37.497948	19