HT5LJBCXY_l01n02_mock_cell11.352000000950e8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HT5LJBCXY_l01n02_mock_cell11.352000000950e8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	126657
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1704	1.3453658305502263	No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	255	0.2013311542196641	No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	231	0.1823823397048722	No Hit
CGTCTAGATCGGAAGAGCACACGTCTAGATCGGAAGAGCACACGTCTAGAT	194	0.153169583994568	Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
TCCGAGACGTGTGCTCTTCCGAGACGTGTGCTCTTCCGAGACGTGTGCTCT	194	0.153169583994568	No Hit
TCTCGGAAGAGCACACGTCTCGGAAGAGCACACGTCTCGGAAGAGCACACG	185	0.14606377855152106	No Hit
CTTCCGAGACGTGTGCTCTTCCGAGACGTGTGCTCTTCCGAGACGTGTGCT	140	0.1105347513362862	No Hit
CGTCTCGGAAGAGCACACGTCTCGGAAGAGCACACGTCTCGGAAGAGCACA	134	0.10579754770758822	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	127	0.1002708101407739	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTATA	30	2.150182E-6	45.000004	34
TCCGTTA	30	2.150182E-6	45.000004	32
CCGTTAT	30	2.150182E-6	45.000004	33
CTTAACC	20	7.00951E-4	45.0	42
ATGGGTC	20	7.00951E-4	45.0	12
GTTCTGT	20	7.00951E-4	45.0	25
ATAATGG	20	7.00951E-4	45.0	9
ATGTGGG	20	7.00951E-4	45.0	2
AGCTTAA	20	7.00951E-4	45.0	40
ACACATG	25	3.8711107E-5	45.0	40
TTACTAT	20	7.00951E-4	45.0	44
TGTATAA	20	7.00951E-4	45.0	6
AATGGGT	20	7.00951E-4	45.0	11
TCGGCTC	20	7.00951E-4	45.0	43
TCAGCGA	20	7.00951E-4	45.0	17
GCTTAAC	20	7.00951E-4	45.0	41
TTAACCG	20	7.00951E-4	45.0	43
GTATACG	25	3.8711107E-5	45.0	36
TATAATG	20	7.00951E-4	45.0	8
TGTCCAC	20	7.00951E-4	45.0	43