FastQCFastQC Report
Mon 24 Feb 2025
HT5K2DRX5_n01_CIVIR_Ferret_Flu_Tissue_P3_H5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHT5K2DRX5_n01_CIVIR_Ferret_Flu_Tissue_P3_H5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1204
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTGAACAGATTGCTGATTCACAGCATCGGTCTCACAGACAGATGGCT30.24916943521594684No Hit
CCTCATAAGTATGTCCTGGAAGAGAAGGTAATGGTGAAATTTCTCCAACT30.24916943521594684No Hit
TGATACTACTAAGGGCTTTCACTGAGGAGGGAGCAATAGTTGGAGAAATT20.16611295681063123No Hit
CTATAGATGCCAAGCATGGAATTACTTTACATACATCATCTCCATTTCAC20.16611295681063123No Hit
ACTTCAAGCAGTAGTTGTAAGGCTTGCATAAATGTTATTTGTTCGAAACT20.16611295681063123No Hit
GCACTGGAGCTAGGATGAGTCCCAATAGTTCTCATTGCATGTACCATCTG20.16611295681063123No Hit
CTTCCAGCACTCCCTTACCTGCCAGGTTGTTCCGGATACTTCTGCTTCTG20.16611295681063123No Hit
AAAATGCATTGTTGCGTTCCTCCAGTGCTGATCCTGTTAAAAATAGGACT20.16611295681063123No Hit
GTCTTGTCTTTAGCCATTCCATGAGAGCCTCAAGATCTGTGTTCTTTCCT20.16611295681063123No Hit
ATGCGGCACAGATTGAAAGCGACAGAGAATAGTTTCGAACAAATAACATT20.16611295681063123No Hit
GGGTAAAGCTGGAATCAACAAGGATTTACCAGATTTTGGCGATCTATTCA20.16611295681063123No Hit
GATTGAAAGCGACAGAGAATAGTTTCGAACAAATAACATTTATGCAAGCC20.16611295681063123No Hit
ACTATCTGTTCTTCACCTGGCCAGCTGAGAGGAAATGGACCAACCCAGGG20.16611295681063123No Hit
CAATTACAACAAGGCAACCAAACGACTTACAGTTCTTGGAAAGGATGCAG20.16611295681063123No Hit
GAAATGAAAAGTGGCGAGAGCAATTGGGACAGAAATTTGAGGAAATAAGG20.16611295681063123No Hit
CTCCTCAGTGAAAGCCCTTAGTAGTATCAAGGTCTCTAATCGGTTAAAGA20.16611295681063123No Hit
GAAATAAGGTGGTTAATTGAAGAAATGCGGCACAGATTGAAAGCGACAGA20.16611295681063123No Hit
CGCCAAATAGTTGCTTTTTTGGGGACTTACTGAGCAGATCACAGAGGCTA20.16611295681063123No Hit
ACTCAGTTTGGTGTGTGTCTTTTCTTCACGCTCCTGTTGAAGCAGGTGCT20.16611295681063123No Hit
CAACTGCATTTTTGACATCCTCATAAGTATGTCCTGGAAGAGAAGGTAAT20.16611295681063123No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)