HT5CKBCX2_l02_n02_KO_PBS_F1_rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HT5CKBCX2_l02_n02_KO_PBS_F1_rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1399090
Sequences flagged as poor quality	0
Sequence length	151
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGCAAAAGCAGGGAGACAGGGAGGGAATCTGGGACTGAGAGGGGGAGGG	5478	0.39154021542574097	No Hit
GAGCAAAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAG	3775	0.26981823899820595	No Hit
GAGTAGGGGCTGGTGGGAGAAGTGTGTGATGTGGACCATGGTAAAAGCTA	2674	0.1911242307499875	No Hit
GAGCAAAAGCAGGGGTACCCTTGTAAGAAATTTTCACCACAGAAGGAGCC	2630	0.1879793294212667	No Hit
AAACAAGGTGGAGTAGGGGCTGGTGGGAGAAGTGTGTGATGTGGACCATG	2066	0.14766741238948175	No Hit
GAGCAAAAGCAGGCTGCACCACGCTGCACAGCGGCAAAGGATGGTGATGA	1841	0.13158553059488667	No Hit
GGTGAGTGCAAAGGGTTGCAACTGAGCTGCCTTCTGTCATTTATCTAGCT	1671	0.11943477546119262	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCAAA	6435	0.0	104.39353	1
AGCAAAA	6930	0.0	95.994705	2
GAGCGAA	1580	0.0	95.043945	1
GCAAAAG	7605	0.0	88.2376	3
CAAAAGC	8005	0.0	83.647224	4
AAAAGCA	9695	0.0	69.29061	5
AAAGCAG	13195	0.0	62.7598	6
AGCGAAA	2425	0.0	62.224693	2
GCGAAAG	2480	0.0	61.137238	3
GCAGGCC	1950	0.0	60.242813	9
AAGCAGG	13850	0.0	59.89431	7
AGCAGGC	4830	0.0	59.00248	8
CGAAAGC	2595	0.0	58.70744	4
TGACGCC	285	0.0	55.9581	145
AGCAGGG	8085	0.0	43.230656	8
AGCAGGT	2460	0.0	42.742283	8
GCTCGGA	90	7.456276E-5	40.303123	1
GCAGGTG	1610	0.0	36.482445	9
GGAGCGA	345	0.0	35.747116	1
TCGCCGG	535	0.0	33.87438	145