HT5CKBCX2_l01_n02_BHE1244_FLUA_REP2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HT5CKBCX2_l01_n02_BHE1244_FLUA_REP2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1831935
Sequences flagged as poor quality	0
Sequence length	151
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACACCATATAAGTGAGAAGTCAGGCTTTAAGCCAGGGAGAGACCTGCCCA	3514	0.19181903288053342	No Hit
ATATCGTGTAGAATTAGGCCTTCGTGGGCTTTGGAGCTGTGTTTGAATCC	3135	0.17113052591931482	No Hit
GAGCAAAAGCAGGTGGGGAGGTAAGAGAGGAGTAGGGGAGGGCCAGAGAC	2793	0.1524617412735714	No Hit
ATATAAGTGAGAAGTCAGGCTTTAAGCCAGGGAGAGACCTGCCCAAGGCA	2079	0.11348655929386141	No Hit
GTCTAGAAGGAGTGTACAGAAAGAGAAAAGGATGGTTTGAGGACAGAGCC	2012	0.10982922429016313	No Hit
GTTAAGATACTTGTGGATAGTCGCACAGCTAGAAGATAACAGAGCTAGGA	1962	0.10709986980979129	No Hit
GGACCAATACATGGGTACCACACTGGGTGCTGAGACTTGGCCTTCTTCAC	1953	0.10660858600332435	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAA	390	0.0	92.94119	145
GAGCGAA	795	0.0	91.25484	1
GAGCAAA	3600	0.0	85.444954	1
GACGAAA	910	0.0	72.49413	145
AGCAAAA	4550	0.0	67.28223	2
AGCGAAA	1340	0.0	63.8852	1
GCGAAAG	1345	0.0	63.64423	2
GCAAAAG	4850	0.0	63.12389	3
CAAAAGC	4870	0.0	62.715683	4
CGAAAGC	1475	0.0	57.546234	3
TGACGCC	450	0.0	56.384327	145
AAAGCAG	7000	0.0	53.87043	6
AAAAGCA	6015	0.0	50.775898	5
TTACGAC	165	2.7284841E-11	43.96584	2
CGTGTAG	1535	0.0	43.95272	5
TCGTGTA	1545	0.0	43.66943	4
TATCGTG	1545	0.0	43.66704	2
ATATCGT	1515	0.0	43.576443	1
CGACGGG	170	3.8198777E-11	42.673893	5
ATCGTGT	1605	0.0	42.036926	3