FastQCFastQC Report
Sun 10 Feb 2019
HT5CKBCX2_l01_n01_DEMUX_FLUA_REP2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHT5CKBCX2_l01_n01_DEMUX_FLUA_REP2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATTCCTACGATATCTTGCTTTATTGAGAAGTTATTGTCTGTCCCAGTCC111.11111111111111No Hit
AAGAAATAGCTCTCAGTTATTCTGCTGGTGCACTTGCCAGTTGCATGGCT111.11111111111111No Hit
CTACTAAGGGCTTTCACTGAGGAGGGAGCAATAGTTGGAGAAATTTCACC111.11111111111111No Hit
GCTCTATCCATGTTGTTCGGGTCCCCATTCCCATTTAGGGCATTTTGGAC111.11111111111111No Hit
TCTCAATATCAGTGCAGATCTTGCTAAAAATATGAGATCTTCTATCTCAG111.11111111111111No Hit
CCCCCTTGGAATGCAGAACCTTCTTCTTGACTCAAGGGGCCTTGCTAAAT111.11111111111111No Hit
GGAGATACTTTTGTCCCTCTGATGAAGCTTAACAATCTTAAATCTTCAAA111.11111111111111No Hit
AGATACTTGTGGATAGTCGCACAGCTAGAAGATAACAGAGCTAGGATTCA111.11111111111111No Hit
AGGTTGTATGCTGATTTGGCCCGCAGATGCCCTCTGTTGATTGGTGTTTC111.11111111111111No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)