[2024-10-16 03:21:53,727] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-10-16 03:21:53,727] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-10-16 03:21:53,728] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-10-16 03:21:53,730] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-10-16 03:21:53,730] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-10-16 03:21:53,730] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-16 03:21:54,579] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-10-16 03:21:54,579] multiqc [INFO ] This is MultiQC v1.9 [2024-10-16 03:21:54,579] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-16 03:21:54,579] multiqc [DEBUG ] Working dir : /scratch/gencore/GENEFLOW/work/nf/e0/2a8db4229cce6c574acd56953e3aa8/merged [2024-10-16 03:21:54,579] multiqc [INFO ] Template : default [2024-10-16 03:21:54,579] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-10-16 03:21:54,579] multiqc [INFO ] Searching : /scratch/gencore/GENEFLOW/work/nf/e0/2a8db4229cce6c574acd56953e3aa8/merged [2024-10-16 03:21:54,579] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-10-16 03:21:54,580] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-52247371/tmp6of65gs5 [2024-10-16 03:21:54,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture2VDJ_fastqc.html [2024-10-16 03:21:54,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture2VDJ_fastqc.html [2024-10-16 03:21:54,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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pattern filesize limit: HT3JTDSXC_n01_SScoculture4VDJ_fastqc.html [2024-10-16 03:21:54,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture4VDJ_fastqc.html [2024-10-16 03:21:54,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotResc1CRISPR_fastqc.html [2024-10-16 03:21:54,994] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotResc1CRISPR_fastqc.html [2024-10-16 03:21:55,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_undetermined_fastqc.html [2024-10-16 03:21:55,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_undetermined_fastqc.html [2024-10-16 03:21:55,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture1VDJ_fastqc.html [2024-10-16 03:21:55,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture1VDJ_fastqc.html [2024-10-16 03:21:55,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotResc2CRISPR_fastqc.html [2024-10-16 03:21:55,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotResc2CRISPR_fastqc.html [2024-10-16 03:21:55,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture2SP_fastqc.html [2024-10-16 03:21:55,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture2SP_fastqc.html [2024-10-16 03:21:55,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture3VDJ_fastqc.html [2024-10-16 03:21:55,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture3VDJ_fastqc.html [2024-10-16 03:21:55,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture1GEX_fastqc.html [2024-10-16 03:21:55,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture1GEX_fastqc.html [2024-10-16 03:21:55,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotD3CRISPR_fastqc.html [2024-10-16 03:21:55,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotD3CRISPR_fastqc.html [2024-10-16 03:21:55,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture4VDJ_fastqc.html [2024-10-16 03:21:55,433] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture4VDJ_fastqc.html [2024-10-16 03:21:55,486] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_undetermined_fastqc.html [2024-10-16 03:21:55,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_undetermined_fastqc.html [2024-10-16 03:21:55,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture2VDJ_fastqc.html [2024-10-16 03:21:55,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture2VDJ_fastqc.html [2024-10-16 03:21:55,588] multiqc [DEBUG 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] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotDGEX_fastqc.html [2024-10-16 03:21:55,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotDGEX_fastqc.html [2024-10-16 03:21:55,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture3GEX_fastqc.html [2024-10-16 03:21:55,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture3GEX_fastqc.html [2024-10-16 03:21:55,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture3SP_fastqc.html [2024-10-16 03:21:55,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture3SP_fastqc.html [2024-10-16 03:21:55,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotRescue2GEX_fastqc.html [2024-10-16 03:21:55,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotRescue2GEX_fastqc.html [2024-10-16 03:21:55,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture4GEX_fastqc.html [2024-10-16 03:21:55,932] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture4GEX_fastqc.html [2024-10-16 03:21:55,978] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotTMPGEX_fastqc.html [2024-10-16 03:21:55,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotTMPGEX_fastqc.html [2024-10-16 03:21:56,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture2GEX_fastqc.html [2024-10-16 03:21:56,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture2GEX_fastqc.html [2024-10-16 03:21:56,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture1GEX_fastqc.html [2024-10-16 03:21:56,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture1GEX_fastqc.html [2024-10-16 03:21:56,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture1VDJ_fastqc.html [2024-10-16 03:21:56,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture1VDJ_fastqc.html [2024-10-16 03:21:56,173] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture4GEX_fastqc.html [2024-10-16 03:21:56,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture4GEX_fastqc.html [2024-10-16 03:21:56,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotTMPCRISPR_fastqc.html [2024-10-16 03:21:56,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotTMPCRISPR_fastqc.html [2024-10-16 03:21:56,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotRescue1GEX_fastqc.html [2024-10-16 03:21:56,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotRescue1GEX_fastqc.html [2024-10-16 03:21:56,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture3SP_fastqc.html [2024-10-16 03:21:56,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture3SP_fastqc.html [2024-10-16 03:21:56,412] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture3GEX_fastqc.html [2024-10-16 03:21:56,414] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture3GEX_fastqc.html [2024-10-16 03:21:56,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotResc2CRISPR_fastqc.html [2024-10-16 03:21:56,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotResc2CRISPR_fastqc.html [2024-10-16 03:21:56,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture1SP_fastqc.html [2024-10-16 03:21:56,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture1SP_fastqc.html [2024-10-16 03:21:56,604] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotRescue1GEX_fastqc.html [2024-10-16 03:21:56,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotRescue1GEX_fastqc.html [2024-10-16 03:21:56,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotResc1CRISPR_fastqc.html [2024-10-16 03:21:56,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotResc1CRISPR_fastqc.html [2024-10-16 03:21:56,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotTMPGEX_fastqc.html [2024-10-16 03:21:56,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_PilotTMPGEX_fastqc.html [2024-10-16 03:21:56,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotRescue2GEX_fastqc.html [2024-10-16 03:21:56,749] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_PilotRescue2GEX_fastqc.html [2024-10-16 03:21:56,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture4SP_fastqc.html [2024-10-16 03:21:56,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n02_SScoculture4SP_fastqc.html [2024-10-16 03:21:56,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture3VDJ_fastqc.html [2024-10-16 03:21:56,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture3VDJ_fastqc.html [2024-10-16 03:21:56,906] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture4SP_fastqc.html [2024-10-16 03:21:56,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT3JTDSXC_n01_SScoculture4SP_fastqc.html [2024-10-16 03:21:57,405] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-16 03:21:57,407] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-16 03:21:57,414] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-10-16 03:21:57,425] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 21 samples (table) [2024-10-16 03:21:57,434] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-10-16 03:21:57,442] multiqc [DEBUG ] No samples found: conpair [2024-10-16 03:21:57,449] multiqc [DEBUG ] No samples found: peddy [2024-10-16 03:21:57,454] multiqc [DEBUG ] No samples found: somalier [2024-10-16 03:21:57,459] multiqc [DEBUG ] No samples found: methylQA [2024-10-16 03:21:57,468] multiqc [DEBUG ] No samples found: mosdepth [2024-10-16 03:21:57,473] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-10-16 03:21:57,476] multiqc [DEBUG ] No samples found: qualimap [2024-10-16 03:21:57,481] multiqc [DEBUG ] No samples found: preseq [2024-10-16 03:21:57,486] multiqc [DEBUG ] No samples found: quast [2024-10-16 03:21:57,492] multiqc [DEBUG ] No samples found: qorts [2024-10-16 03:21:57,497] multiqc [DEBUG ] No samples found: rna_seqc [2024-10-16 03:21:57,502] multiqc [DEBUG ] No samples found: rockhopper [2024-10-16 03:21:57,507] multiqc [DEBUG ] No samples found: rsem [2024-10-16 03:21:57,518] multiqc [DEBUG ] No samples found: rseqc [2024-10-16 03:21:57,523] multiqc [DEBUG ] No samples found: busco [2024-10-16 03:21:57,528] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-10-16 03:21:57,533] multiqc [DEBUG ] No samples found: disambiguate [2024-10-16 03:21:57,538] multiqc [DEBUG ] No samples found: supernova [2024-10-16 03:21:57,551] multiqc [DEBUG ] No samples found: deeptools [2024-10-16 03:21:57,556] multiqc [DEBUG ] No samples found: sargasso [2024-10-16 03:21:57,561] multiqc [DEBUG ] No samples found: verifybamid [2024-10-16 03:21:57,565] multiqc [DEBUG ] No samples found: mirtrace [2024-10-16 03:21:57,571] multiqc [DEBUG ] No samples found: happy [2024-10-16 03:21:57,576] multiqc [DEBUG ] No samples found: mirtop [2024-10-16 03:21:57,583] multiqc [DEBUG ] No samples found: homer [2024-10-16 03:21:57,587] multiqc [DEBUG ] No samples found: macs2 [2024-10-16 03:21:57,592] multiqc [DEBUG ] No samples found: theta2 [2024-10-16 03:21:57,597] multiqc [DEBUG ] No samples found: snpeff [2024-10-16 03:21:57,604] multiqc [DEBUG ] No samples found: gatk [2024-10-16 03:21:57,608] multiqc [DEBUG ] No samples found: htseq [2024-10-16 03:21:57,614] multiqc [DEBUG ] No samples found: bcftools [2024-10-16 03:21:57,620] multiqc [DEBUG ] No samples found: featureCounts [2024-10-16 03:21:57,626] multiqc [DEBUG ] No samples found: fgbio [2024-10-16 03:21:57,639] multiqc [DEBUG ] No samples found: dragen [2024-10-16 03:21:57,644] multiqc [DEBUG ] No samples found: dedup [2024-10-16 03:21:57,649] multiqc [DEBUG ] No samples found: damageprofiler [2024-10-16 03:21:57,670] multiqc [DEBUG ] No samples found: biobambam2 [2024-10-16 03:21:57,676] multiqc [DEBUG ] No samples found: mtnucratio [2024-10-16 03:21:57,678] multiqc [DEBUG ] No samples found: picard [2024-10-16 03:21:57,682] multiqc [DEBUG ] No samples found: prokka [2024-10-16 03:21:57,687] multiqc [DEBUG ] No samples found: samblaster [2024-10-16 03:21:57,695] multiqc [DEBUG ] No samples found: samtools [2024-10-16 03:21:57,699] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-10-16 03:21:57,704] multiqc [DEBUG ] No samples found: bamtools [2024-10-16 03:21:57,709] multiqc [DEBUG ] No samples found: jellyfish [2024-10-16 03:21:57,716] multiqc [DEBUG ] No samples found: vcftools [2024-10-16 03:21:57,721] multiqc [DEBUG ] No samples found: longranger [2024-10-16 03:21:57,726] multiqc [DEBUG ] No samples found: stacks [2024-10-16 03:21:57,731] multiqc [DEBUG ] No samples found: varscan2 [2024-10-16 03:21:57,744] multiqc [DEBUG ] No samples found: bbmap [2024-10-16 03:21:57,750] multiqc [DEBUG ] No samples found: bismark [2024-10-16 03:21:57,755] multiqc [DEBUG ] No samples found: biscuit [2024-10-16 03:21:57,760] multiqc [DEBUG ] No samples found: hicexplorer [2024-10-16 03:21:57,765] multiqc [DEBUG ] No samples found: hicup [2024-10-16 03:21:57,770] multiqc [DEBUG ] No samples found: hicpro [2024-10-16 03:21:57,774] multiqc [DEBUG ] No samples found: salmon [2024-10-16 03:21:57,779] multiqc [DEBUG ] No samples found: kallisto [2024-10-16 03:21:57,784] multiqc [DEBUG ] No samples found: slamdunk [2024-10-16 03:21:57,789] multiqc [DEBUG ] No samples found: star [2024-10-16 03:21:57,793] multiqc [DEBUG ] No samples found: hisat2 [2024-10-16 03:21:57,799] multiqc [DEBUG ] No samples found: tophat [2024-10-16 03:21:57,804] multiqc [DEBUG ] No samples found: bowtie2 [2024-10-16 03:21:57,809] multiqc [DEBUG ] No samples found: bowtie1 [2024-10-16 03:21:57,814] multiqc [DEBUG ] No samples found: snpsplit [2024-10-16 03:21:57,818] multiqc [DEBUG ] No samples found: kat [2024-10-16 03:21:57,823] multiqc [DEBUG ] No samples found: leehom [2024-10-16 03:21:57,828] multiqc [DEBUG ] No samples found: adapterRemoval [2024-10-16 03:21:57,832] multiqc [DEBUG ] No samples found: clipandmerge [2024-10-16 03:21:57,838] multiqc [DEBUG ] No samples found: cutadapt [2024-10-16 03:21:57,842] multiqc [DEBUG ] No samples found: flexbar [2024-10-16 03:21:57,846] multiqc [DEBUG ] No samples found: kaiju [2024-10-16 03:21:57,851] multiqc [DEBUG ] No samples found: kraken [2024-10-16 03:21:57,857] multiqc [DEBUG ] No samples found: malt [2024-10-16 03:21:57,862] multiqc [DEBUG ] No samples found: trimmomatic [2024-10-16 03:21:57,867] multiqc [DEBUG ] No samples found: sickle [2024-10-16 03:21:57,872] multiqc [DEBUG ] No samples found: skewer [2024-10-16 03:21:57,876] multiqc [DEBUG ] No samples found: sortmerna [2024-10-16 03:21:57,881] multiqc [DEBUG ] No samples found: biobloomtools [2024-10-16 03:21:57,886] multiqc [DEBUG ] No samples found: fastq_screen [2024-10-16 03:21:57,890] multiqc [DEBUG ] No samples found: afterqc [2024-10-16 03:21:57,895] multiqc [DEBUG ] No samples found: fastp [2024-10-16 03:22:03,313] multiqc.modules.fastqc.fastqc [INFO ] Found 42 reports [2024-10-16 03:22:03,654] multiqc [DEBUG ] No samples found: pycoqc [2024-10-16 03:22:03,660] multiqc [DEBUG ] No samples found: minionqc [2024-10-16 03:22:03,665] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-10-16 03:22:03,670] multiqc [DEBUG ] No samples found: clusterflow [2024-10-16 03:22:03,674] multiqc [DEBUG ] No samples found: bcl2fastq [2024-10-16 03:22:03,680] multiqc [DEBUG ] No samples found: interop [2024-10-16 03:22:03,684] multiqc [DEBUG ] No samples found: ivar [2024-10-16 03:22:03,690] multiqc [DEBUG ] No samples found: flash [2024-10-16 03:22:03,694] multiqc [DEBUG ] No samples found: seqyclean [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-10-16 03:22:03,694] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-10-16 03:22:03,695] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-10-16 03:22:03,749] multiqc [INFO ] Compressing plot data [2024-10-16 03:22:04,410] multiqc [INFO ] Report : multiqc_report.html [2024-10-16 03:22:04,410] multiqc [INFO ] Data : multiqc_data [2024-10-16 03:22:04,410] multiqc [DEBUG ] Moving data file from '/state/partition1/job-52247371/tmp6of65gs5/multiqc_data' to '/scratch/gencore/GENEFLOW/work/nf/e0/2a8db4229cce6c574acd56953e3aa8/merged/multiqc_data' [2024-10-16 03:22:04,547] multiqc [INFO ] MultiQC complete