[2022-05-12 07:44:32,183] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-05-12 07:44:32,184] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-05-12 07:44:32,184] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-05-12 07:44:32,184] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-05-12 07:44:32,185] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-05-12 07:44:32,185] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HT335BGXL/merged [2022-05-12 07:44:32,734] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-05-12 07:44:32,734] multiqc [INFO ] This is MultiQC v1.9 [2022-05-12 07:44:32,734] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HT335BGXL/merged [2022-05-12 07:44:32,734] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HT335BGXL/merged [2022-05-12 07:44:32,734] multiqc [INFO ] Template : default [2022-05-12 07:44:32,735] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-05-12 07:44:32,735] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HT335BGXL/merged [2022-05-12 07:44:32,735] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-05-12 07:44:32,735] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-19456330/tmpx6u797a_ [2022-05-12 07:44:32,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1980_d02_rep1_fastqc.html [2022-05-12 07:44:32,864] multiqc [DEBUG ] File ignored by longranger/invocation because 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[DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1986_d04_rep1_fastqc.html [2022-05-12 07:44:33,113] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1973_d08_rep1_fastqc.html [2022-05-12 07:44:33,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1973_d08_rep1_fastqc.html [2022-05-12 07:44:33,178] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_F17_1801_d04_rep1_fastqc.html [2022-05-12 07:44:33,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_F17_1801_d04_rep1_fastqc.html [2022-05-12 07:44:33,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[2022-05-12 07:44:33,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_W17_1409_d12_rep1_fastqc.html [2022-05-12 07:44:33,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_W17_1409_d12_rep1_fastqc.html [2022-05-12 07:44:33,618] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sp19_2232_d12_rep1_fastqc.html [2022-05-12 07:44:33,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sp19_2232_d12_rep1_fastqc.html [2022-05-12 07:44:33,693] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_F17_1800_d12_rep1_fastqc.html [2022-05-12 07:44:33,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize 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[2022-05-12 07:44:34,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sp19_2254_d10_rep1_fastqc.html [2022-05-12 07:44:34,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sp19_2254_d10_rep1_fastqc.html [2022-05-12 07:44:34,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1980_d12_rep1_fastqc.html [2022-05-12 07:44:34,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1980_d12_rep1_fastqc.html [2022-05-12 07:44:34,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_FCC_2232_d04_rep1_fastqc.html [2022-05-12 07:44:34,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize 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07:44:43,473] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_F17_1800_d04_rep1_fastqc.html [2022-05-12 07:44:43,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_F17_1800_d04_rep1_fastqc.html [2022-05-12 07:44:43,517] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sp19_2243_d10_rep1_fastqc.html [2022-05-12 07:44:43,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sp19_2243_d10_rep1_fastqc.html [2022-05-12 07:44:43,567] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1913_d10_rep1_fastqc.html [2022-05-12 07:44:43,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2022-05-12 07:44:55,027] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_W17_1416_d06_rep1_fastqc.html [2022-05-12 07:44:55,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_W17_1416_d06_rep1_fastqc.html [2022-05-12 07:44:55,109] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_F17_1794_d04_rep1_fastqc.html [2022-05-12 07:44:55,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_F17_1794_d04_rep1_fastqc.html [2022-05-12 07:44:55,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1975_d12_rep1_fastqc.html [2022-05-12 07:44:55,155] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize 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limit: HT335BGXL_n02_New_Sm18_1974_d08_rep1_fastqc.html [2022-05-12 07:44:55,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1974_d08_rep1_fastqc.html [2022-05-12 07:44:55,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_FCC_1797_d06_rep1_fastqc.html [2022-05-12 07:44:55,719] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_FCC_1797_d06_rep1_fastqc.html [2022-05-12 07:44:55,779] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_FCC_1969_d02_rep1_fastqc.html [2022-05-12 07:44:55,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_FCC_1969_d02_rep1_fastqc.html [2022-05-12 07:44:55,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_F17_1794_d02_rep1_fastqc.html [2022-05-12 07:44:55,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_F17_1794_d02_rep1_fastqc.html [2022-05-12 07:44:55,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_W17_1417_d12_rep1_fastqc.html [2022-05-12 07:44:55,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_W17_1417_d12_rep1_fastqc.html [2022-05-12 07:44:56,002] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1913_d08_rep1_fastqc.html [2022-05-12 07:44:56,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1913_d08_rep1_fastqc.html [2022-05-12 07:44:56,056] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_W17_1417_d02_rep1_fastqc.html [2022-05-12 07:44:56,058] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_W17_1417_d02_rep1_fastqc.html [2022-05-12 07:44:56,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1970_d08_rep1_fastqc.html [2022-05-12 07:44:56,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1970_d08_rep1_fastqc.html [2022-05-12 07:44:56,182] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1981_d12_rep1_fastqc.html [2022-05-12 07:44:56,184] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1981_d12_rep1_fastqc.html [2022-05-12 07:44:56,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sp19_2254_d06_rep1_fastqc.html [2022-05-12 07:44:56,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sp19_2254_d06_rep1_fastqc.html [2022-05-12 07:44:56,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sp20_2868_d08_rep1_fastqc.html [2022-05-12 07:44:56,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sp20_2868_d08_rep1_fastqc.html [2022-05-12 07:44:56,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1913_d08_rep1_fastqc.html [2022-05-12 07:44:56,332] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1913_d08_rep1_fastqc.html [2022-05-12 07:44:56,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_F17_1794_d06_rep1_fastqc.html [2022-05-12 07:44:56,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_F17_1794_d06_rep1_fastqc.html [2022-05-12 07:44:56,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_F17_1794_d12_rep1_fastqc.html [2022-05-12 07:44:56,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_F17_1794_d12_rep1_fastqc.html [2022-05-12 07:44:56,506] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_undetermined_fastqc.html [2022-05-12 07:44:56,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_undetermined_fastqc.html [2022-05-12 07:44:56,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1980_d10_rep1_fastqc.html [2022-05-12 07:44:56,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1980_d10_rep1_fastqc.html [2022-05-12 07:44:56,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1914_d06_rep1_fastqc.html [2022-05-12 07:44:56,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1914_d06_rep1_fastqc.html [2022-05-12 07:44:56,665] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1914_d10_rep1_fastqc.html [2022-05-12 07:44:56,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1914_d10_rep1_fastqc.html [2022-05-12 07:44:56,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1975_d04_rep1_fastqc.html [2022-05-12 07:44:56,730] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sm18_1975_d04_rep1_fastqc.html [2022-05-12 07:44:56,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_W17_1414_d02_rep1_fastqc.html [2022-05-12 07:44:56,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_W17_1414_d02_rep1_fastqc.html [2022-05-12 07:44:56,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_P1_MRTPCR_Water_rep1_fastqc.html [2022-05-12 07:44:56,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_P1_MRTPCR_Water_rep1_fastqc.html [2022-05-12 07:44:56,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_P2_3918_Uninfected_rep1_fastqc.html [2022-05-12 07:44:56,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_P2_3918_Uninfected_rep1_fastqc.html [2022-05-12 07:44:56,959] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sp19_2239_d02_rep1_fastqc.html [2022-05-12 07:44:56,961] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n01_New_Sp19_2239_d02_rep1_fastqc.html [2022-05-12 07:44:57,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1983_d10_rep1_fastqc.html [2022-05-12 07:44:57,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_Sm18_1983_d10_rep1_fastqc.html [2022-05-12 07:44:57,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_F17_1789_d12_rep1_fastqc.html [2022-05-12 07:44:57,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_F17_1789_d12_rep1_fastqc.html [2022-05-12 07:44:57,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HT335BGXL_n02_New_P2_Seq_Water_rep1_fastqc.html [2022-05-12 07:44:57,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HT335BGXL_n02_New_P2_Seq_Water_rep1_fastqc.html [2022-05-12 07:44:57,542] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-05-12 07:44:57,543] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-05-12 07:44:57,552] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-05-12 07:44:57,643] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 207 samples (table) [2022-05-12 07:44:57,652] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2022-05-12 07:44:57,657] multiqc [DEBUG ] No samples found: conpair [2022-05-12 07:44:57,662] multiqc [DEBUG ] No samples found: peddy [2022-05-12 07:44:57,666] multiqc [DEBUG ] No samples found: somalier [2022-05-12 07:44:57,671] multiqc [DEBUG ] No samples found: methylQA [2022-05-12 07:44:57,679] multiqc [DEBUG ] No samples found: mosdepth [2022-05-12 07:44:57,684] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-05-12 07:44:57,687] multiqc [DEBUG ] No samples found: qualimap [2022-05-12 07:44:57,692] multiqc [DEBUG ] No samples found: preseq [2022-05-12 07:44:57,697] multiqc [DEBUG ] No samples found: quast [2022-05-12 07:44:57,702] multiqc [DEBUG ] No samples found: qorts [2022-05-12 07:44:57,707] multiqc [DEBUG ] No samples found: rna_seqc [2022-05-12 07:44:57,712] multiqc [DEBUG ] No samples found: rockhopper [2022-05-12 07:44:57,716] multiqc [DEBUG ] No samples found: rsem [2022-05-12 07:44:57,728] multiqc [DEBUG ] No samples found: rseqc [2022-05-12 07:44:57,733] multiqc [DEBUG ] No samples found: busco [2022-05-12 07:44:57,737] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-05-12 07:44:57,742] multiqc [DEBUG ] No samples found: disambiguate [2022-05-12 07:44:57,747] multiqc [DEBUG ] No samples found: supernova [2022-05-12 07:44:57,762] multiqc [DEBUG ] No samples found: deeptools [2022-05-12 07:44:57,766] multiqc [DEBUG ] No samples found: sargasso [2022-05-12 07:44:57,773] multiqc [DEBUG ] No samples found: verifybamid [2022-05-12 07:44:57,777] multiqc [DEBUG ] No samples found: mirtrace [2022-05-12 07:44:57,782] multiqc [DEBUG ] No samples found: happy [2022-05-12 07:44:57,787] multiqc [DEBUG ] No samples found: mirtop [2022-05-12 07:44:57,793] multiqc [DEBUG ] No samples found: homer [2022-05-12 07:44:57,798] multiqc [DEBUG ] No samples found: macs2 [2022-05-12 07:44:57,803] multiqc [DEBUG ] No samples found: theta2 [2022-05-12 07:44:57,807] multiqc [DEBUG ] No samples found: snpeff [2022-05-12 07:44:57,814] multiqc [DEBUG ] No samples found: gatk [2022-05-12 07:44:57,819] multiqc [DEBUG ] No samples found: htseq [2022-05-12 07:44:57,825] multiqc [DEBUG ] No samples found: bcftools [2022-05-12 07:44:57,829] multiqc [DEBUG ] No samples found: featureCounts [2022-05-12 07:44:57,836] multiqc [DEBUG ] No samples found: fgbio [2022-05-12 07:44:57,848] multiqc [DEBUG ] No samples found: dragen [2022-05-12 07:44:57,855] multiqc [DEBUG ] No samples found: dedup [2022-05-12 07:44:57,860] multiqc [DEBUG ] No samples found: damageprofiler [2022-05-12 07:44:57,884] multiqc [DEBUG ] No samples found: biobambam2 [2022-05-12 07:44:57,888] multiqc [DEBUG ] No samples found: mtnucratio [2022-05-12 07:44:57,890] multiqc [DEBUG ] No samples found: picard [2022-05-12 07:44:57,895] multiqc [DEBUG ] No samples found: prokka [2022-05-12 07:44:57,900] multiqc [DEBUG ] No samples found: samblaster [2022-05-12 07:44:57,909] multiqc [DEBUG ] No samples found: samtools [2022-05-12 07:44:57,914] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-05-12 07:44:57,919] multiqc [DEBUG ] No samples found: bamtools [2022-05-12 07:44:57,923] multiqc [DEBUG ] No samples found: jellyfish [2022-05-12 07:44:57,930] multiqc [DEBUG ] No samples found: vcftools [2022-05-12 07:44:57,936] multiqc [DEBUG ] No samples found: longranger [2022-05-12 07:44:57,940] multiqc [DEBUG ] No samples found: stacks [2022-05-12 07:44:57,945] multiqc [DEBUG ] No samples found: varscan2 [2022-05-12 07:44:57,962] multiqc [DEBUG ] No samples found: bbmap [2022-05-12 07:44:57,967] multiqc [DEBUG ] No samples found: bismark [2022-05-12 07:44:57,972] multiqc [DEBUG ] No samples found: biscuit [2022-05-12 07:44:57,977] multiqc [DEBUG ] No samples found: hicexplorer [2022-05-12 07:44:57,982] multiqc [DEBUG ] No samples found: hicup [2022-05-12 07:44:57,987] multiqc [DEBUG ] No samples found: hicpro [2022-05-12 07:44:57,991] multiqc [DEBUG ] No samples found: salmon [2022-05-12 07:44:57,996] multiqc [DEBUG ] No samples found: kallisto [2022-05-12 07:44:58,002] multiqc [DEBUG ] No samples found: slamdunk [2022-05-12 07:44:58,006] multiqc [DEBUG ] No samples found: star [2022-05-12 07:44:58,011] multiqc [DEBUG ] No samples found: hisat2 [2022-05-12 07:44:58,016] multiqc [DEBUG ] No samples found: tophat [2022-05-12 07:44:58,021] multiqc [DEBUG ] No samples found: bowtie2 [2022-05-12 07:44:58,026] multiqc [DEBUG ] No samples found: bowtie1 [2022-05-12 07:44:58,030] multiqc [DEBUG ] No samples found: snpsplit [2022-05-12 07:44:58,035] multiqc [DEBUG ] No samples found: kat [2022-05-12 07:44:58,039] multiqc [DEBUG ] No samples found: leehom [2022-05-12 07:44:58,044] multiqc [DEBUG ] No samples found: adapterRemoval [2022-05-12 07:44:58,048] multiqc [DEBUG ] No samples found: clipandmerge [2022-05-12 07:44:58,052] multiqc [DEBUG ] No samples found: cutadapt [2022-05-12 07:44:58,057] multiqc [DEBUG ] No samples found: flexbar [2022-05-12 07:44:58,062] multiqc [DEBUG ] No samples found: kaiju [2022-05-12 07:44:58,068] multiqc [DEBUG ] No samples found: kraken [2022-05-12 07:44:58,072] multiqc [DEBUG ] No samples found: malt [2022-05-12 07:44:58,077] multiqc [DEBUG ] No samples found: trimmomatic [2022-05-12 07:44:58,082] multiqc [DEBUG ] No samples found: sickle [2022-05-12 07:44:58,087] multiqc [DEBUG ] No samples found: skewer [2022-05-12 07:44:58,091] multiqc [DEBUG ] No samples found: sortmerna [2022-05-12 07:44:58,095] multiqc [DEBUG ] No samples found: biobloomtools [2022-05-12 07:44:58,099] multiqc [DEBUG ] No samples found: fastq_screen [2022-05-12 07:44:58,104] multiqc [DEBUG ] No samples found: afterqc [2022-05-12 07:44:58,109] multiqc [DEBUG ] No samples found: fastp [2022-05-12 07:45:38,490] multiqc.modules.fastqc.fastqc [INFO ] Found 414 reports [2022-05-12 07:46:17,785] multiqc [DEBUG ] No samples found: pycoqc [2022-05-12 07:46:17,790] multiqc [DEBUG ] No samples found: minionqc [2022-05-12 07:46:17,795] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-05-12 07:46:17,800] multiqc [DEBUG ] No samples found: clusterflow [2022-05-12 07:46:17,805] multiqc [DEBUG ] No samples found: bcl2fastq [2022-05-12 07:46:17,810] multiqc [DEBUG ] No samples found: interop [2022-05-12 07:46:17,815] multiqc [DEBUG ] No samples found: ivar [2022-05-12 07:46:17,820] multiqc [DEBUG ] No samples found: flash [2022-05-12 07:46:17,825] multiqc [DEBUG ] No samples found: seqyclean [2022-05-12 07:46:17,825] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2022-05-12 07:46:17,825] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-05-12 07:46:17,825] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2022-05-12 07:46:17,825] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-05-12 07:46:18,517] multiqc [INFO ] Compressing plot data [2022-05-12 07:46:18,659] multiqc [INFO ] Report : multiqc_report.html [2022-05-12 07:46:18,659] multiqc [INFO ] Data : multiqc_data [2022-05-12 07:46:18,659] multiqc [DEBUG ] Moving data file from '/state/partition1/job-19456330/tmpx6u797a_/multiqc_data' to '/scratch/gencore/logs/html/HT335BGXL/merged/multiqc_data' [2022-05-12 07:46:18,798] multiqc [INFO ] MultiQC complete