FastQCFastQC Report
Thu 12 May 2022
HT335BGXL_n02_New_Sm18_1914_d10_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHT335BGXL_n02_New_Sm18_1914_d10_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1209527
Sequences flagged as poor quality0
Sequence length151
%GC46

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAAAAGACTGATCAAGAGATTGAAGCAAGAAGGGGAAAAGAAACCTATA17950.1484051203486983No Hit
ACATAATGGCATACAAAAGACTGATCAAGAGATTGAAGCAAGAAGGGGAA16600.13724373246731986No Hit
ATATAGATGTTACATTCATGAAATAACATAATGGCATACAAAAGACTGAT15010.12409809785147417No Hit
ATTTGAGAGAGAGCACAAGCAGGTGGAGGGGCAGAGGGAGAGGGACAAGC14640.12103905080250378No Hit
ATATATAATTAGAAAATCAAGCAAATGCAGGAGGCCCAGGTGACTCAGTT14200.1174012651226471No Hit
CCCTATACCTCTCTCTTCCCCTCAGAGGTAATGACATTTTTTTTTATTCA13660.11293670997009574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)