FastQCFastQC Report
Tue 27 Oct 2020
HT237DRXX_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHT237DRXX_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1027975317
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCTAC1829650.016.773251
CGGAACC1777850.016.1605031
CCGGACA1674950.016.002581
GCCCGAA1470000.015.8134081
AACGGGA1572300.015.3813641
CGCTGAG1408700.015.3116973
CTGGACG1232800.015.25972751
AGGGAAG1071550.015.0466983
ACGCGAG1010850.015.006733
ATGGGAG1515300.014.9979881
TGGGCTG1417400.014.8626751
GTGCTGG1377600.014.7546231
GGGGTCG483700.014.7022175
AATGGCT2092700.014.6128271
CCCGGAA1167650.014.5961441
TGCGGAG972450.014.5563443
GACCGTG1552750.014.540611
AGCCGAA1149300.014.4815548
CGAATTG2414800.014.4459031
CCGGGTA1477850.014.4170141
Produced by FastQC (version 0.11.5)