FastQCFastQC Report
Thu 17 Dec 2020
HNYY3DRXX_l01_n02_Fluc_A06.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNYY3DRXX_l01_n02_Fluc_A06.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1958194
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGTAG7100.024.5059495
CCGTGCG1902.1948738E-422.8937179
GTCTAGA8200.022.125271
ACAGCGC5900.022.1170948
GACTAGG4607.2759576E-1222.0636718
GTCCTAA8850.021.3202631
ACTATGC13150.020.9491028
TAGACCG9350.020.9348985
GTATAAG14400.020.6625461
TACTATG14150.020.4932637
CTATGCA12050.020.4555199
CCGCGCG2505.980295E-520.2990959
TATACAG17900.019.4404755
TATACTG22400.019.0951335
GTATATA30450.018.8279171
ACACCGC6950.018.7761426
CCGTCGC6950.018.7761429
ACCGCGC3101.4688358E-518.7083668
CTAATAC17200.018.5456853
GTATAAT23200.018.455531
Produced by FastQC (version 0.11.5)