FastQCFastQC Report
Tue 16 Mar 2021
HNWF2AFX2_n01_AH10517-3h-anti-Hop1-SNP.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNWF2AFX2_n01_AH10517-3h-anti-Hop1-SNP.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17496081
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC2034671.1629290010717257TruSeq Adapter, Index 9 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)