FastQCFastQC Report
Thu 15 Oct 2020
HNTYJDRXX_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNTYJDRXX_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences990417355
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA2095050.016.30161
CTGGACG1373750.015.55351
GCCCGAA1469150.015.4132291
GGGACCT1441200.015.3735681
CCGGGTA1830900.015.3277921
GGAATGG2545550.015.3023681
GACCGTG1876250.015.1621971
CCCGGAA1773900.014.7591281
GGGCTAC1348600.014.5628731
TGCGGAG1382650.014.2600863
CGGGACT2346650.014.1627981
ATCGGCG1492850.014.0986631
TGCGACG1603150.014.0974241
TCGGGAC1548400.013.9720251
CTGTGGG1665600.013.9107541
GAGACCC1647900.013.8710081
AATGGCT1702500.013.8098161
ACGCACG1971350.013.7630551
CATGACG1515200.013.7233068
TGGGCTG1377250.013.6681011
Produced by FastQC (version 0.11.5)