[2025-02-15 00:47:49,069] multiqc                                            [DEBUG  ]  No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2025-02-15 00:47:49,070] multiqc                                            [DEBUG  ]  No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2025-02-15 00:47:49,070] multiqc                                            [DEBUG  ]  No MultiQC config found: multiqc_config.yaml
[2025-02-15 00:47:49,072] multiqc                                            [DEBUG  ]  Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml
[2025-02-15 00:47:49,072] multiqc                                            [DEBUG  ]  New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}}
[2025-02-15 00:47:49,072] multiqc                                            [DEBUG  ]  Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml .
[2025-02-15 00:47:49,112] multiqc                                            [DEBUG  ]  Could not connect to multiqc.info for version check: <urlopen error unknown url type: https>
[2025-02-15 00:47:49,112] multiqc                                            [INFO   ]  This is MultiQC v1.9
[2025-02-15 00:47:49,112] multiqc                                            [DEBUG  ]  Command     : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml .
[2025-02-15 00:47:49,113] multiqc                                            [DEBUG  ]  Working dir : /scratch/gencore/GENEFLOW/work/nf/ef/2b9b0d45fdc55680132cc408575cd0/merged
[2025-02-15 00:47:49,113] multiqc                                            [INFO   ]  Template    : default
[2025-02-15 00:47:49,113] multiqc                                            [DEBUG  ]  Running Python 3.8.6 (default, Oct 11 2020, 20:34:31)  [GCC Intel(R) C++ gcc 8.3.1 mode]
[2025-02-15 00:47:49,113] multiqc                                            [INFO   ]  Searching   : /scratch/gencore/GENEFLOW/work/nf/ef/2b9b0d45fdc55680132cc408575cd0/merged
[2025-02-15 00:47:49,113] multiqc                                            [DEBUG  ]  Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2025-02-15 00:47:49,113] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /state/partition1/job-57286941/tmpmezu3p2k
[2025-02-15 00:47:49,217] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_06_fastqc.html
[2025-02-15 00:47:49,220] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_06_fastqc.html
[2025-02-15 00:47:49,271] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_07_fastqc.html
[2025-02-15 00:47:49,272] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_07_fastqc.html
[2025-02-15 00:47:49,321] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_15_fastqc.html
[2025-02-15 00:47:49,323] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_15_fastqc.html
[2025-02-15 00:47:49,370] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_10_fastqc.html
[2025-02-15 00:47:49,372] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_10_fastqc.html
[2025-02-15 00:47:49,419] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_12_fastqc.html
[2025-02-15 00:47:49,421] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_12_fastqc.html
[2025-02-15 00:47:49,468] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_01_fastqc.html
[2025-02-15 00:47:49,470] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_01_fastqc.html
[2025-02-15 00:47:49,518] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_12_fastqc.html
[2025-02-15 00:47:49,519] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_12_fastqc.html
[2025-02-15 00:47:49,566] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_01_fastqc.html
[2025-02-15 00:47:49,568] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_01_fastqc.html
[2025-02-15 00:47:49,615] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_09_fastqc.html
[2025-02-15 00:47:49,617] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_09_fastqc.html
[2025-02-15 00:47:49,663] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_03_fastqc.html
[2025-02-15 00:47:49,665] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_03_fastqc.html
[2025-02-15 00:47:49,712] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_08_fastqc.html
[2025-02-15 00:47:49,714] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_08_fastqc.html
[2025-02-15 00:47:49,760] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_10_fastqc.html
[2025-02-15 00:47:49,762] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_10_fastqc.html
[2025-02-15 00:47:49,810] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_07_fastqc.html
[2025-02-15 00:47:49,812] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_07_fastqc.html
[2025-02-15 00:47:49,858] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_13_fastqc.html
[2025-02-15 00:47:49,860] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_13_fastqc.html
[2025-02-15 00:47:49,906] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_04_fastqc.html
[2025-02-15 00:47:49,908] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_04_fastqc.html
[2025-02-15 00:47:49,955] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_02_fastqc.html
[2025-02-15 00:47:49,957] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_02_fastqc.html
[2025-02-15 00:47:50,004] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_11_fastqc.html
[2025-02-15 00:47:50,006] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_11_fastqc.html
[2025-02-15 00:47:50,052] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_14_fastqc.html
[2025-02-15 00:47:50,054] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_14_fastqc.html
[2025-02-15 00:47:50,100] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_15_fastqc.html
[2025-02-15 00:47:50,102] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_15_fastqc.html
[2025-02-15 00:47:50,149] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_undetermined_fastqc.html
[2025-02-15 00:47:50,151] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_undetermined_fastqc.html
[2025-02-15 00:47:50,198] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_08_fastqc.html
[2025-02-15 00:47:50,200] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_08_fastqc.html
[2025-02-15 00:47:50,246] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_undetermined_fastqc.html
[2025-02-15 00:47:50,248] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_undetermined_fastqc.html
[2025-02-15 00:47:50,294] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_13_fastqc.html
[2025-02-15 00:47:50,296] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_13_fastqc.html
[2025-02-15 00:47:50,343] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_02_fastqc.html
[2025-02-15 00:47:50,345] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_02_fastqc.html
[2025-02-15 00:47:50,393] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_16_fastqc.html
[2025-02-15 00:47:50,394] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_16_fastqc.html
[2025-02-15 00:47:50,441] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_03_fastqc.html
[2025-02-15 00:47:50,443] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_03_fastqc.html
[2025-02-15 00:47:50,490] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_14_fastqc.html
[2025-02-15 00:47:50,492] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_14_fastqc.html
[2025-02-15 00:47:50,538] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_16_fastqc.html
[2025-02-15 00:47:50,540] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_16_fastqc.html
[2025-02-15 00:47:50,607] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_05_fastqc.html
[2025-02-15 00:47:50,609] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_05_fastqc.html
[2025-02-15 00:47:50,656] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_11_fastqc.html
[2025-02-15 00:47:50,658] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_11_fastqc.html
[2025-02-15 00:47:50,704] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_04_fastqc.html
[2025-02-15 00:47:50,706] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_04_fastqc.html
[2025-02-15 00:47:50,753] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_05_fastqc.html
[2025-02-15 00:47:50,755] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n01_sr5965_4_05_fastqc.html
[2025-02-15 00:47:50,801] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_06_fastqc.html
[2025-02-15 00:47:50,803] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_06_fastqc.html
[2025-02-15 00:47:50,852] multiqc                                            [DEBUG  ]  File ignored by hicexplorer because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_09_fastqc.html
[2025-02-15 00:47:50,854] multiqc                                            [DEBUG  ]  File ignored by longranger/invocation because it exceeded search pattern filesize limit: HNTLKDRX5_n02_sr5965_4_09_fastqc.html
[2025-02-15 00:47:51,370] multiqc.plots.bargraph                             [DEBUG  ]  Using matplotlib version 3.3.2
[2025-02-15 00:47:51,371] multiqc.plots.linegraph                            [DEBUG  ]  Using matplotlib version 3.3.2
[2025-02-15 00:47:51,379] multiqc.modules.custom_content.custom_content      [INFO   ]  run_stats: Found 1 samples (table)
[2025-02-15 00:47:51,388] multiqc.modules.custom_content.custom_content      [INFO   ]  demux_report: Found 17 samples (table)
[2025-02-15 00:47:51,398] multiqc.modules.custom_content.custom_content      [INFO   ]  undetermined_barcodes: Found 20 samples (table)
[2025-02-15 00:47:51,402] multiqc                                            [DEBUG  ]  No samples found: conpair
[2025-02-15 00:47:51,407] multiqc                                            [DEBUG  ]  No samples found: peddy
[2025-02-15 00:47:51,412] multiqc                                            [DEBUG  ]  No samples found: somalier
[2025-02-15 00:47:51,416] multiqc                                            [DEBUG  ]  No samples found: methylQA
[2025-02-15 00:47:51,424] multiqc                                            [DEBUG  ]  No samples found: mosdepth
[2025-02-15 00:47:51,428] multiqc                                            [DEBUG  ]  No samples found: phantompeakqualtools
[2025-02-15 00:47:51,432] multiqc                                            [DEBUG  ]  No samples found: qualimap
[2025-02-15 00:47:51,436] multiqc                                            [DEBUG  ]  No samples found: preseq
[2025-02-15 00:47:51,441] multiqc                                            [DEBUG  ]  No samples found: quast
[2025-02-15 00:47:51,445] multiqc                                            [DEBUG  ]  No samples found: qorts
[2025-02-15 00:47:51,450] multiqc                                            [DEBUG  ]  No samples found: rna_seqc
[2025-02-15 00:47:51,454] multiqc                                            [DEBUG  ]  No samples found: rockhopper
[2025-02-15 00:47:51,458] multiqc                                            [DEBUG  ]  No samples found: rsem
[2025-02-15 00:47:51,469] multiqc                                            [DEBUG  ]  No samples found: rseqc
[2025-02-15 00:47:51,473] multiqc                                            [DEBUG  ]  No samples found: busco
[2025-02-15 00:47:51,478] multiqc                                            [DEBUG  ]  No samples found: goleft_indexcov
[2025-02-15 00:47:51,482] multiqc                                            [DEBUG  ]  No samples found: disambiguate
[2025-02-15 00:47:51,486] multiqc                                            [DEBUG  ]  No samples found: supernova
[2025-02-15 00:47:51,499] multiqc                                            [DEBUG  ]  No samples found: deeptools
[2025-02-15 00:47:51,503] multiqc                                            [DEBUG  ]  No samples found: sargasso
[2025-02-15 00:47:51,508] multiqc                                            [DEBUG  ]  No samples found: verifybamid
[2025-02-15 00:47:51,513] multiqc                                            [DEBUG  ]  No samples found: mirtrace
[2025-02-15 00:47:51,517] multiqc                                            [DEBUG  ]  No samples found: happy
[2025-02-15 00:47:51,522] multiqc                                            [DEBUG  ]  No samples found: mirtop
[2025-02-15 00:47:51,528] multiqc                                            [DEBUG  ]  No samples found: homer
[2025-02-15 00:47:51,532] multiqc                                            [DEBUG  ]  No samples found: macs2
[2025-02-15 00:47:51,536] multiqc                                            [DEBUG  ]  No samples found: theta2
[2025-02-15 00:47:51,541] multiqc                                            [DEBUG  ]  No samples found: snpeff
[2025-02-15 00:47:51,547] multiqc                                            [DEBUG  ]  No samples found: gatk
[2025-02-15 00:47:51,552] multiqc                                            [DEBUG  ]  No samples found: htseq
[2025-02-15 00:47:51,557] multiqc                                            [DEBUG  ]  No samples found: bcftools
[2025-02-15 00:47:51,562] multiqc                                            [DEBUG  ]  No samples found: featureCounts
[2025-02-15 00:47:51,568] multiqc                                            [DEBUG  ]  No samples found: fgbio
[2025-02-15 00:47:51,580] multiqc                                            [DEBUG  ]  No samples found: dragen
[2025-02-15 00:47:51,584] multiqc                                            [DEBUG  ]  No samples found: dedup
[2025-02-15 00:47:51,589] multiqc                                            [DEBUG  ]  No samples found: damageprofiler
[2025-02-15 00:47:51,610] multiqc                                            [DEBUG  ]  No samples found: biobambam2
[2025-02-15 00:47:51,615] multiqc                                            [DEBUG  ]  No samples found: mtnucratio
[2025-02-15 00:47:51,617] multiqc                                            [DEBUG  ]  No samples found: picard
[2025-02-15 00:47:51,623] multiqc                                            [DEBUG  ]  No samples found: prokka
[2025-02-15 00:47:51,627] multiqc                                            [DEBUG  ]  No samples found: samblaster
[2025-02-15 00:47:51,635] multiqc                                            [DEBUG  ]  No samples found: samtools
[2025-02-15 00:47:51,640] multiqc                                            [DEBUG  ]  No samples found: sexdeterrmine
[2025-02-15 00:47:51,645] multiqc                                            [DEBUG  ]  No samples found: bamtools
[2025-02-15 00:47:51,649] multiqc                                            [DEBUG  ]  No samples found: jellyfish
[2025-02-15 00:47:51,657] multiqc                                            [DEBUG  ]  No samples found: vcftools
[2025-02-15 00:47:51,662] multiqc                                            [DEBUG  ]  No samples found: longranger
[2025-02-15 00:47:51,667] multiqc                                            [DEBUG  ]  No samples found: stacks
[2025-02-15 00:47:51,671] multiqc                                            [DEBUG  ]  No samples found: varscan2
[2025-02-15 00:47:51,685] multiqc                                            [DEBUG  ]  No samples found: bbmap
[2025-02-15 00:47:51,690] multiqc                                            [DEBUG  ]  No samples found: bismark
[2025-02-15 00:47:51,694] multiqc                                            [DEBUG  ]  No samples found: biscuit
[2025-02-15 00:47:51,699] multiqc                                            [DEBUG  ]  No samples found: hicexplorer
[2025-02-15 00:47:51,703] multiqc                                            [DEBUG  ]  No samples found: hicup
[2025-02-15 00:47:51,708] multiqc                                            [DEBUG  ]  No samples found: hicpro
[2025-02-15 00:47:51,712] multiqc                                            [DEBUG  ]  No samples found: salmon
[2025-02-15 00:47:51,717] multiqc                                            [DEBUG  ]  No samples found: kallisto
[2025-02-15 00:47:51,721] multiqc                                            [DEBUG  ]  No samples found: slamdunk
[2025-02-15 00:47:51,726] multiqc                                            [DEBUG  ]  No samples found: star
[2025-02-15 00:47:51,730] multiqc                                            [DEBUG  ]  No samples found: hisat2
[2025-02-15 00:47:51,734] multiqc                                            [DEBUG  ]  No samples found: tophat
[2025-02-15 00:47:51,739] multiqc                                            [DEBUG  ]  No samples found: bowtie2
[2025-02-15 00:47:51,743] multiqc                                            [DEBUG  ]  No samples found: bowtie1
[2025-02-15 00:47:51,748] multiqc                                            [DEBUG  ]  No samples found: snpsplit
[2025-02-15 00:47:51,752] multiqc                                            [DEBUG  ]  No samples found: kat
[2025-02-15 00:47:51,756] multiqc                                            [DEBUG  ]  No samples found: leehom
[2025-02-15 00:47:51,760] multiqc                                            [DEBUG  ]  No samples found: adapterRemoval
[2025-02-15 00:47:51,764] multiqc                                            [DEBUG  ]  No samples found: clipandmerge
[2025-02-15 00:47:51,769] multiqc                                            [DEBUG  ]  No samples found: cutadapt
[2025-02-15 00:47:51,773] multiqc                                            [DEBUG  ]  No samples found: flexbar
[2025-02-15 00:47:51,777] multiqc                                            [DEBUG  ]  No samples found: kaiju
[2025-02-15 00:47:51,782] multiqc                                            [DEBUG  ]  No samples found: kraken
[2025-02-15 00:47:51,786] multiqc                                            [DEBUG  ]  No samples found: malt
[2025-02-15 00:47:51,790] multiqc                                            [DEBUG  ]  No samples found: trimmomatic
[2025-02-15 00:47:51,795] multiqc                                            [DEBUG  ]  No samples found: sickle
[2025-02-15 00:47:51,799] multiqc                                            [DEBUG  ]  No samples found: skewer
[2025-02-15 00:47:51,803] multiqc                                            [DEBUG  ]  No samples found: sortmerna
[2025-02-15 00:47:51,807] multiqc                                            [DEBUG  ]  No samples found: biobloomtools
[2025-02-15 00:47:51,812] multiqc                                            [DEBUG  ]  No samples found: fastq_screen
[2025-02-15 00:47:51,816] multiqc                                            [DEBUG  ]  No samples found: afterqc
[2025-02-15 00:47:51,821] multiqc                                            [DEBUG  ]  No samples found: fastp
[2025-02-15 00:47:52,713] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 34 reports
[2025-02-15 00:47:53,014] multiqc                                            [DEBUG  ]  No samples found: pycoqc
[2025-02-15 00:47:53,018] multiqc                                            [DEBUG  ]  No samples found: minionqc
[2025-02-15 00:47:53,023] multiqc                                            [DEBUG  ]  No samples found: multivcfanalyzer
[2025-02-15 00:47:53,028] multiqc                                            [DEBUG  ]  No samples found: clusterflow
[2025-02-15 00:47:53,032] multiqc                                            [DEBUG  ]  No samples found: bcl2fastq
[2025-02-15 00:47:53,036] multiqc                                            [DEBUG  ]  No samples found: interop
[2025-02-15 00:47:53,041] multiqc                                            [DEBUG  ]  No samples found: ivar
[2025-02-15 00:47:53,045] multiqc                                            [DEBUG  ]  No samples found: flash
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  No samples found: seqyclean
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'general_stats' not found.
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report-1' not found.
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report-2' not found.
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'.
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'.
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'.
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'.
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'.
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'.
[2025-02-15 00:47:53,050] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'general_stats' not found for module '	Barcodes of Undetermined Reads'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report' not found for module '	Barcodes of Undetermined Reads'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report-1' not found for module '	Barcodes of Undetermined Reads'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report-2' not found for module '	Barcodes of Undetermined Reads'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'undetermined_barcodes' not found for module '	Barcodes of Undetermined Reads'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'run_stats' not found for module '	Barcodes of Undetermined Reads'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'fastqc' not found for module '	Barcodes of Undetermined Reads'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'general_stats' not found for module 'FastQC'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'run_stats' not found for module 'FastQC'.
[2025-02-15 00:47:53,051] multiqc                                            [DEBUG  ]  Reordering sections: anchor 'fastqc' not found for module 'FastQC'.
[2025-02-15 00:47:53,093] multiqc                                            [INFO   ]  Compressing plot data
[2025-02-15 00:47:53,670] multiqc                                            [INFO   ]  Report      : multiqc_report.html
[2025-02-15 00:47:53,671] multiqc                                            [INFO   ]  Data        : multiqc_data
[2025-02-15 00:47:53,671] multiqc                                            [DEBUG  ]  Moving data file from '/state/partition1/job-57286941/tmpmezu3p2k/multiqc_data' to '/scratch/gencore/GENEFLOW/work/nf/ef/2b9b0d45fdc55680132cc408575cd0/merged/multiqc_data'
[2025-02-15 00:47:53,795] multiqc                                            [INFO   ]  MultiQC complete