FastQCFastQC Report
Tue 6 Oct 2020
HNNYJDRXX_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNNYJDRXX_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1056376677
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACCT1810850.017.0797021
GGGCTAC1647400.016.5398521
CCCGGAA1279550.016.3412341
ATCGGCG1648950.016.2913251
GTGCTGG1840150.016.115031
CTGGACG1139700.015.7019191
CTGGCAG1817400.015.5348061
CGGAACC1684550.015.1530821
GCCCGAA1154550.015.14623451
AACGGGA1381950.015.0873661
CGGCGAG525500.015.0726743
TACCGGG1495300.015.0655961
GCCGATG1573550.014.9544021
GGAATGG1863050.014.8575531
CCGGACA1325100.014.72781851
GTGCGTG1612750.014.7096811
AGGCTGC1898650.014.5615771
GACCGTG1485500.014.4921361
TGCGGAG962500.014.3923983
GATGGGT1320600.014.36022953
Produced by FastQC (version 0.11.5)