FastQCFastQC Report
Wed 12 Aug 2020
HNNWMDRXX_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNNWMDRXX_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1064177351
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCGAA1934200.017.0947461
ATCGGCG1518700.016.173541
GTGCTGG1471150.015.7311211
GGGACCT1615800.015.682241
GGCGCAC1122450.015.5367474
TGGGCTG1473700.015.424341
CCCGGAA1364000.015.4106411
AGGCTGC2128100.015.3627311
AACGGGA1491750.015.302691
CCGGACA1621750.015.2891551
GGGCTAC1453500.015.2870461
CGGAACC1597000.015.1191371
CGGAGAA1797950.015.0608961
CTGGACG1130850.014.9047951
TGTGGCG2217500.014.8715361
TGCGACG1445500.014.8564951
GGCACGT1605300.014.7671691
AGGGAAG1091700.014.7614723
TACCGGG1538450.014.7529671
CCGGGTA1374050.014.67180251
Produced by FastQC (version 0.11.5)