HNLF5AFXY_n02_HALO_LHY1_pGST_CCA1_Col_B_j.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	HNLF5AFXY_n02_HALO_LHY1_pGST_CCA1_Col_B_j.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3892094
Sequences flagged as poor quality	0
Sequence length	76
%GC	35

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6515	0.16739061286803456	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGAT	525	0.009034049	6.6667523	61
GTGTAGG	6630	0.0	6.6519256	70
GAGTGTT	2985	0.0	6.566502	70
GGGAAAG	4860	0.0	6.553835	70
CGTGTAG	6940	0.0	6.405228	69
GTAGGGA	5480	0.0	6.1957335	67
TAGGGAA	5620	0.0	6.165956	68
AGTGTTA	2970	0.0	5.8925586	70
TGTAGGG	6050	0.0	5.8435006	66
AGAGTGT	3240	0.0	5.833633	69
GTCGTGT	8560	0.0	5.8063736	70
AGGGAAA	6350	0.0	5.677457	69
CGTCGTG	9380	0.0	5.485357	69
GCGTCGT	10090	0.0	5.4115763	70
TCGTGTA	8165	0.0	5.3586497	68
AAGAGTG	3835	0.0	5.202487	68
TGGCATA	1305	5.285181E-5	5.095851	58
AGCGTCG	10855	0.0	5.0301986	69