FastQCFastQC Report
Mon 19 Oct 2020
HNJW5DRXX_l02_n02_DJ69.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNJW5DRXX_l02_n02_DJ69.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112355644
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1833410.16317916347842748No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCCGC346750.024.7711121
GATCCCG388500.021.8103241
GATCCGG415350.021.3610461
GATCACG531250.020.9613741
GATCAAC1360850.019.2818431
GATCCAC849550.019.0938341
GATCCTG663000.018.9734331
GATCCGA750050.018.9669571
GATCTGC648750.018.260771
GATCCTC893150.018.0724031
GATCCAG788800.017.9892161
GATCGTG633950.017.7487221
GATCCGT565250.017.5957261
GATCCTT1439400.017.5189691
GATCAGC720400.016.9078061
GATCGCG268850.016.8647631
GATCCCA682650.016.3656391
GATCGCC363500.016.125651
GATCACC616400.015.6295241
GATCGCA536500.015.4961991
Produced by FastQC (version 0.11.5)