HNJT3BCX2_l01_n02_TR_283-5_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNJT3BCX2_l01_n02_TR_283-5_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1208316
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGCAAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG	3227	0.2670658999798066	No Hit
GAGCAAAAGCAGGTAGATATTTAAAGATGAGTCTTCTAACCGAGGTCGAA	2158	0.17859566537230329	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	1596	0.13208465335226877	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	1548	0.12811218257475693	No Hit
GTCATGAATGGGTGGGTGGAAGGGACAGCGGTGGGTGTGTGGGGTGCAGC	1476	0.12215347640848917	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	1466	0.12132587832984086	No Hit
CCCTGTGCCATCCCCCACTGCCACCCTGCTGCACCCCACACACCCACCGC	1348	0.11156022100179092	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	1313	0.10866362772652188	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	425	0.0	107.10754	1
CGATTAA	50	2.595516E-8	85.330956	145
GTTACGT	240	0.0	72.949844	1
TGACGCC	270	0.0	71.10913	145
AGCGAAA	670	0.0	67.941345	2
GCAGGTA	810	0.0	62.472923	9
GCGAAAG	770	0.0	61.848873	3
CGAAAGC	760	0.0	59.893185	4
GGTTATA	155	0.0	58.73639	1
TACGCAG	50	2.3862059E-4	56.023163	5
GTCGTCT	65	1.2267352E-5	54.69933	145
GAGCAAA	3965	0.0	54.400528	1
AAGCAGG	5495	0.0	48.04534	7
GCGACTA	150	1.4551915E-11	46.685966	4
GTTATGT	575	0.0	45.063972	1
AGCAGGT	1505	0.0	44.336452	8
CTATAAC	80	4.583746E-5	43.768093	4
CGAAAGT	65	8.70341E-4	43.09474	4
CAAAAGC	5100	0.0	42.429306	4
AAAGCAG	6215	0.0	42.141315	6