HNJT3BCX2_l01_n02_TR_156-7_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNJT3BCX2_l01_n02_TR_156-7_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1546677
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	2516	0.16267132698035855	No Hit
CCCTGTGCCATCCCCCACTGCCACCCTGCTGCACCCCACACACCCACCGC	2391	0.1545894844237032	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	2351	0.1520032948055735	No Hit
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	2037	0.1317017063032553	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	1980	0.12801638609742047	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	1895	0.12252073315889485	No Hit
CCATCTCAACAGATGCAGAAAAAGCATTTGATAGCGCTGCTACCAAATCA	1887	0.12200349523526889	No Hit
GTATTATTTTTTCATTTACCTCAAAGTATTTCTGTGTTCCTATTTTGGTT	1817	0.11747766340354192	No Hit
GCAGTGCAGCAACTAAATATGTAGAGCATATATGAACAAACCTAAGAGAA	1754	0.11340441475498762	No Hit
GTCATGAATGGGTGGGTGGAAGGGACAGCGGTGGGTGTGTGGGGTGCAGC	1605	0.10377085842745448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	330	0.0	82.64349	1
TGACGCC	370	0.0	69.20266	145
GTCGTCT	120	0.0	65.197876	145
GCCGACC	320	0.0	62.234333	145
GTTACGT	305	0.0	61.904457	1
AGTGCGA	40	0.006984864	52.438354	6
ACGGTAT	40	0.006984864	52.438354	6
CGAAAGC	550	0.0	52.12392	4
AGCGAAA	585	0.0	46.619404	2
AAACGCC	95	2.1923152E-6	44.921024	145
GATAGCC	280	0.0	43.18301	145
GCGAAAG	725	0.0	42.439735	3
TGAAGCG	315	0.0	42.17537	5
GCTACTA	400	0.0	42.115425	9
GTAATGC	240	0.0	40.79198	1
ACTCCGA	480	0.0	40.79198	1
TCGCCGC	215	0.0	39.697647	145
TCTCGGG	575	0.0	39.58258	145
GAGCAAA	4110	0.0	38.452507	1
GATATAC	530	0.0	38.263096	3