HNJT3BCX2_l01_n01_TR_123-7_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HNJT3BCX2_l01_n01_TR_123-7_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2282898
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCATGAATGGGTGGGTGGAAGGGACAGCGGTGGGTGTGTGGGGTGCAGC	3865	0.16930235166003912	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	3600	0.15769429908826413	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	3533	0.15475943296634365	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	3175	0.1390776110014552	No Hit
GCAGTGCAGCAACTAAATATGTAGAGCATATATGAACAAACCTAAGAGAA	3147	0.13785109978632423	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	3095	0.1355732932439382	No Hit
CCCTGTGCCATCCCCCACTGCCACCCTGCTGCACCCCACACACCCACCGC	2958	0.12957214908419035	No Hit
CCATCTCAACAGATGCAGAAAAAGCATTTGATAGCGCTGCTACCAAATCA	2513	0.11007938155800216	No Hit
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	2371	0.10385921753840952	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	605	104.3172	1
TACGTGT	555	77.07156	3
TTACGTG	560	76.38342	2
GTTACGT	565	75.75226	1
AGCGAAA	1090	57.866592	2
CGAAAGC	1125	56.710735	4
GCGAAAG	1260	55.81312	3
AGTCGGC	270	53.703342	5
ACTCCGA	660	52.75812	1
GGTTATA	445	52.165333	1
ACGTGTT	855	51.724804	4
TATGTGT	1485	48.821224	3
AATGGGT	1650	46.575447	7
GATATAC	650	45.730465	3
GAGCAAA	6235	45.608063	1
TCCGAGG	760	44.835228	3
GTTATGT	1755	42.57475	1
AACGGGT	710	40.8448	3
ATGGGTG	1830	40.80574	8
CAGCAAC	1160	40.62473	7